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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G433210
Reference: TK1151 Chr: Chr05 Coordinates: 108105486-108114014 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3414 bp · TkA05G433210|TK1151|cDNA

CTAAACACAATTTTTTGCCGAAGGAAAAGTGGAAAACTGTAAACCCTCGTTCTGCGCAGCCCCTTAAACCCACTGAAAGCCTTCACGGAATCTAGGGCACGTTCAATCCCCCAAGACAGAGTTCATCTCTCTGCCAACCAAATTTAGTCTGTGTTCAGCTATTGACGATAGCTGCTTGAAGATTGTATTGATTTTGGATCGAAGATGAAGAATCTGAAGCTCTCATGGGAGCTGTCATCCAACCTCCAGTTACAATCAGA...

CDS

Download CDS FASTA

4131 bp · TkA05G433210|TK1151|CDS

ATGAAGAATCTGAAGCTCTCATGGGAGCTGTCATCCAACCTCCAGTTACAATCAGAAAATGAAGTGATACGTTGCACCGCTTTCGATATCGAACAGAATCGTTTCTTCTTTGCGTCTTCTGCTAACTTCATTTACACCATTCATCTTTCATCTTCTCAAAATGAAGAATCATGGGGTAAATCACCTTCAGTTCCACTGGTTGAAACCATCGATCTAGATCCTGATGACTCTATTACCTCCTTGGAGTATCTCATGGAGAA...

Protein

Download Protein FASTA

1376 aa · TkA05G433210|TK1151|PROTEIN

MKNLKLSWELSSNLQLQSENEVIRCTAFDIEQNRFFFASSANFIYTIHLSSSQNEESWGKSPSVPLVETIDLDPDDSITSLEYLMEKEALIIGTSSGVLLLYNVDDNVTEVVGRVEGGVKSLSPSPDGDLLCIITGLGQMLVMTHDWDLLYEISLEDSDTCDQDIDSECSASWRGDGKFFATITTVQDSSHKKLKIWERDTGNLHSVSEPKSFMGETVEWMPSGAKIATVCDHKEEKKPPSVVFFERNGLQRSSFTVNNG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G433210
TK1151 IDTkA05G433210
OH-1004 IDLXL04_021955
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.100
Protein coverage (%)TK1151 93.532 / OH-1004 99.613
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G433210
LocationChr05:108105486-108114014 (+)
DescriptionSimilar to ELP1: Elongator complex protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g13680 Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine) (By similarity).
The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth.2005 · DOI: 10.1073/pnas.0502600102
Mutations in ABO1/ELO2, a subunit of holo-Elongator, increase abscisic acid sensitivity and drought tolerance in Arabidopsis thaliana.2006 · DOI: 10.1128/mcb.00433-06
Elongator mediates ABA responses, oxidative stress resistance and anthocyanin biosynthesis in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2009.03931.x
Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation.2010 · DOI: 10.1073/pnas.0913559107
At5g59440 Catalyzes the conversion of dTMP to dTDP (Probable).
The first zygotic division in Arabidopsis requires de novo transcription of thymidylate kinase.2008 · DOI: 10.1111/j.1365-313x.2007.03372.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021955 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002098 tRNA wobble uridine modification Biological Process
GO:0002926 tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation Biological Process
GO:0006400 tRNA modification Biological Process
GO:0006417 regulation of translation Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0007252 I-kappaB phosphorylation Biological Process
GO:0008284 positive regulation of cell population proliferation Biological Process
GO:0009734 auxin-activated signaling pathway Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009787 regulation of abscisic acid-activated signaling pathway Biological Process
GO:0009965 leaf morphogenesis Biological Process
KEGG gene cross-reference
ath:AT5G13680
hsa:8518
mmu:230233
ocu:100009360
rno:140934
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.610
Rank 1 · TkA05G433210 · TK1151
Nucleus0.311
Rank 2 · TkA05G433210 · TK1151
Golgi apparatus0.144
Rank 3 · TkA05G433210 · TK1151
Lysosome / Vacuole0.079
Rank 4 · TkA05G433210 · TK1151
Endoplasmic reticulum0.076
Rank 5 · TkA05G433210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04762Beta-prop_ELP1_1st1-160 aa
PF25174Beta-prop_THOC321-134 aa
PF23797Beta-prop_ELP1_2nd22-65 aa
PF23756Beta-prop_HPS522-48 aa
PF23389Beta-prop_WDR19_1st68-105 aa
PF24807WD40_CDC20-Fz71-199 aa
PF12894ANAPC4_WD4074-106 aa
PF23381Beta-prop_IFT122_1st75-140 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G433210PF04762Beta-prop_ELP1_1st11605.3e-80269.7
TkA05G433210PF25174Beta-prop_THOC3211341.7e-1144.4
TkA05G433210PF23797Beta-prop_ELP1_2nd22659.5e-48164.2
TkA05G433210PF23756Beta-prop_HPS522480.1112.4
TkA05G433210PF23389Beta-prop_WDR19_1st681051.2e-0525.2
TkA05G433210PF24807WD40_CDC20-Fz711990.0001721.7
TkA05G433210PF12894ANAPC4_WD40741063.8e-0524.6
TkA05G433210PF23381Beta-prop_IFT122_1st751400.0003820.6
TkA05G433210PF23185CFAP43_N751350.211.5
TkA05G433210PF23756Beta-prop_HPS5871460.1112.4
TkA05G433210PF08662eIF2A902000.01515.9
TkA05G433210PF26550Tricorn_2nd982110.01514.8
TkA05G433210PF23389Beta-prop_WDR19_1st1171421.2e-0525.2
TkA05G433210PF00400WD401171320.3812.1
TkA05G433210PF12894ANAPC4_WD401251843.8e-0524.6
TkA05G433210PF04762Beta-prop_ELP1_1st1603225.3e-80269.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FNA4Arabidopsis thalianasp|Q9FNA4|ELP1_ARATH Elongator complex protein 152.100%Swiss-ProtHigh
Q0WW55Arabidopsis thalianasp|Q0WW55|ZEUS1_ARATH Thymidylate kinase68.500%Swiss-ProtHigh

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