TkA05G431300 | RubberDandelionOmics

Gene overview

TkA05G431300

Reference: TK1151 Chr: Chr05 Coordinates: 107572093-107576697 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1286 bp · TkA05G431300|TK1151|cDNA

TTTTATTCCTATCATCCTCCTACCCATTTAAAATTATGACAAGTGTACAAACTCACTATTTTAATTATATTTTAAATATTGAAAAATACACTTGTCAAAAAGTTAAATGGGTAGGCACAAAGGTAGGAAGAAATTGTAGGACTTAATTTAATTTTTCTTTCCATATACATATATTACATGTTAACTATAATGTCATGTCGGCCTTGCTACCTTGAATCCCTTCCTACCCGGCTATACCCCCAACGTCACCGCCAGCCAGC...

CDS

Download CDS FASTA

873 bp · TkA05G431300|TK1151|CDS

ATGAACTGTCCAAAAGACTGGCCGGAGCTAGTTGTCCGGGTTCAATCCCTCTCGGAAACCGGCAACACAATGATCCCAGACCGGTACATCAAACCGCCACCTGAACGGCCGTGTTTTACCCGCGACACCACACTCAACTTAAACATCCCTGTCATCGATCTTTCTGCACTGATGACCGGCGACCCCACACTCGTAAACGCCACCATGGATGAAATCTCCGATGCATGCCGTGAGTGGGGGTTTTTTCAGGTGGTGAATCA...

Protein

Download Protein FASTA

290 aa · TkA05G431300|TK1151|PROTEIN

MNCPKDWPELVVRVQSLSETGNTMIPDRYIKPPPERPCFTRDTTLNLNIPVIDLSALMTGDPTLVNATMDEISDACREWGFFQVVNHGIRDEVVDGVREIWRSFFHLPMEMKQEYANSPTTYEGYGSRLGFQKGAILDWSDYFFLHYLPSNLKDHKWPSQPPFLREAVEEYSKEIVKLGNVLLKVFSINLGLEEDYLQKAFGGDNDNIGACLRVNFYPKCPQPDLTLGLSSHSDPGGMTFLLPDEHVSGLQVRKDGEWIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G431300`
TK1151 ID	TkA05G431300
OH-1004 ID	LXL04_021852
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.500
Protein coverage (%)	TK1151 94.138 / OH-1004 76.111 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G431300

Location Chr05:107572093-107576697 (-)

Description Similar to At5g05600: Probable 2-oxoglutarate-dependent dioxygenase At5g05600

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05600`	2-oxoglutarate-dependent dioxygenase involved in the oxidation of jasmonate (JA), a stress-induced phytohormone synthesized in response to attack by pathogens and herbivores, which triggers the activation of defense responses via the JA-mediated signaling pathway.	Detoxification of polycyclic aromatic hydrocarbons (PAHs) in Arabidopsis thaliana involves a putative flavonol synthase.2017 · DOI: 10.1016/j.jhazmat.2016.08.058
`At3g55970`	2-oxoglutarate-dependent dioxygenase involved in the oxidation of jasmonate (JA), a stress-induced phytohormone synthesized in response to attack by pathogens and herbivores, which triggers the activation of defense responses via the JA-mediated signaling pathway.	No verified direct reference in this release
`At3g11180`	2-oxoglutarate-dependent dioxygenase involved in the oxidation of jasmonate (JA), a stress-induced phytohormone synthesized in response to attack by pathogens and herbivores, which triggers the activation of defense responses via the JA-mediated signaling pathway.	No verified direct reference in this release
`At2g38240`	2-oxoglutarate-dependent dioxygenase involved in the oxidation of jasmonate (JA), a stress-induced phytohormone synthesized in response to attack by pathogens and herbivores, which triggers the activation of defense responses via the JA-mediated signaling pathway.	No verified direct reference in this release
`At3g21420`	Oxoglutarate-dependent dioxygenase involved in the biosynthesis of strigolactone natural products, bioactive compounds promoting plant fitness and soil microbe interactions, but preventing shoot branching.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021852 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0097237 cellular response to toxic substance Biological Process

GO:1900150 regulation of defense response to fungus Biological Process

GO:1900366 negative regulation of defense response to insect Biological Process

GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005506 iron ion binding Molecular Function

GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function

GO:0031418 L-ascorbic acid binding Molecular Function

GO:0045431 flavonol synthase activity Molecular Function

GO:0045486 flavanone 3-dioxygenase activity Molecular Function

KEGG gene cross-reference

ag:AAP57395

ath:AT2G38240

ath:AT3G11180

ath:AT3G55970

ath:AT5G05600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.779

Rank 1 · TkA05G431300 · TK1151

Nucleus0.355

Rank 2 · TkA05G431300 · TK1151

Peroxisome0.067

Rank 3 · TkA05G431300 · TK1151

Mitochondrion0.054

Rank 4 · TkA05G431300 · TK1151

Endoplasmic reticulum0.042

Rank 5 · TkA05G431300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226DIOX_N49-159 aa

PF031712OG-FeII_Oxy210-274 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G431300	`PF14226`	DIOX_N	49	159	6e-31	108.2
TkA05G431300	`PF03171`	2OG-FeII_Oxy	210	274	2.7e-19	70.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FFF6`	Arabidopsis thaliana	sp\|Q9FFF6\|JOX2_ARATH Jasmonate-induced oxygenase 2	62.100%	Swiss-Prot	High
`Q9LY48`	Arabidopsis thaliana	sp\|Q9LY48\|JOX3_ARATH Jasmonate-induced oxygenase 3	61.900%	Swiss-Prot	High
`Q9SRM3`	Arabidopsis thaliana	sp\|Q9SRM3\|JOX1_ARATH Jasmonate-induced oxygenase 1	59.900%	Swiss-Prot	High
`O80449`	Arabidopsis thaliana	sp\|O80449\|JOX4_ARATH Jasmonate-induced oxygenase 4	55.800%	Swiss-Prot	High
`Q9LIF4`	Arabidopsis thaliana	sp\|Q9LIF4\|LBO1_ARATH Protein LATERAL BRANCHING OXIDOREDUCTASE 1	40.400%	Swiss-Prot	Medium

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