RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G420330
Reference: TK1151 Chr: Chr05 Coordinates: 104702545-104707016 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2853 bp · TkA05G420330|TK1151|cDNA

TGGTTGGGATGGAATCCCCTTTTGGTGTCGCTAAGTGAGCTGAGGTTTTTTTATCGTTGAAGGTTAAGGTTTTTCTGTGGCTAGATCTAATCGTGAATGATCGATGGAGATGGAAAGGGGAATCGATCCTGATACGCTGCTTGATTATGTCGAACTTCAGATATTTCCAATTCAGAACAGGTACGAGGCATACGTATGTATCAACAACAAGACACAAAAAGTAGCATCTGGAACCTTGGAACAGTTACTATTGCATTCTC...

CDS

Download CDS FASTA

2517 bp · TkA05G420330|TK1151|CDS

ATGGAGATGGAAAGGGGAATCGATCCTGATACGCTGCTTGATTATGTCGAACTTCAGATATTTCCAATTCAGAACAGGTACGAGGCATACGTATGTATCAACAACAAGACACAAAAAGTAGCATCTGGAACCTTGGAACAGTTACTATTGCATTCTCCTCGAGTAAAAGATTTGTCATCCAAAGGTTCAAACACAAATTTCAAGATTTTACCACCTGATAACCCTAATGATGCTGATTGGTTTACAGCAGCCACATTAAC...

Protein

Download Protein FASTA

838 aa · TkA05G420330|TK1151|PROTEIN

MEMERGIDPDTLLDYVELQIFPIQNRYEAYVCINNKTQKVASGTLEQLLLHSPRVKDLSSKGSNTNFKILPPDNPNDADWFTAATLTRFLHIIGSQDIVSIGNEISQLEETRKFQLSLSVKGEVDITSSINSKNELLRAVDLRLTALKDDLASAFDQVTGQRCSTKDISDLENFSHHFGAKDIRDSLQKFVEMNLFPSPQASNTTTITTTTTFNKNDKNTPTPDNENSSVSSDDINNNQPSIERSRTVTRSITPRRSASP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G420330
TK1151 IDTkA05G420330
OH-1004 IDLXL04_021779
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.700
Protein coverage (%)TK1151 100.000 / OH-1004 87.280
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G420330
LocationChr05:104702545-104707016 (-)
DescriptionSimilar to CIP7: COP1-interacting protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021779 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009416 response to light stimulus Biological Process
GO:0009718 anthocyanin-containing compound biosynthetic process Biological Process
GO:0015995 chlorophyll biosynthetic process Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT4G27430
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.555
Rank 1 · TkA05G420330 · TK1151
Nucleus0.292
Rank 2 · TkA05G420330 · TK1151
Cell membrane0.245
Rank 3 · TkA05G420330 · TK1151
Endoplasmic reticulum0.044
Rank 4 · TkA05G420330 · TK1151
Golgi apparatus0.033
Rank 5 · TkA05G420330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30469CIP7_N15-72 aa
PF29080UPF0507_helical37-56 aa
PF30468CIP7_M99-116 aa
PF30468CIP7_M128-193 aa
PF29080UPF0507_helical146-196 aa
PF29089Protamine-3299-336 aa
PF30468CIP7_M313-334 aa
PF26019HTH_TIMELESS411-433 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G420330PF30469CIP7_N15728.3e-2277.9
TkA05G420330PF29080UPF0507_helical37560.3312.4
TkA05G420330PF30468CIP7_M991160.0002421.8
TkA05G420330PF30468CIP7_M1281930.0002421.8
TkA05G420330PF29080UPF0507_helical1461960.3312.4
TkA05G420330PF29089Protamine-32993360.007417.1
TkA05G420330PF30468CIP7_M3133340.0002421.8
TkA05G420330PF26019HTH_TIMELESS4114330.1413.1
TkA05G420330PF29080UPF0507_helical4114290.3312.4
TkA05G420330PF29089Protamine-34134200.007417.1
TkA05G420330PF30468CIP7_M4254520.0002421.8
TkA05G420330PF26019HTH_TIMELESS4854980.1413.1
TkA05G420330PF29089Protamine-37187310.007417.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser