TkA05G420320 | RubberDandelionOmics

Gene overview

TkA05G420320

Reference: TK1151 Chr: Chr05 Coordinates: 104699139-104701709 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1042 bp · TkA05G420320|TK1151|cDNA

CGAACTTTCAGGTTCAATGGCCCGTGAATGGACAGGGATTCAGCTCTTTCCTCTTGCAACCCAAACAAAGTTGTTGGAACTACTCGGAGATTTAAAAACGAAGGAAAGAACCAGTTTGACTATTCTGGTAATGGGAAGGGCGGTGTAGGTAAATCTTCAACCATAAACTCCATTCTTGGTGAAAGAGCAGTTTCAGTCAGTGCCTTCCAGTCAGATGTACCAAGACCCGTGATGGTATCCCGTTCATGGTCTGGATTCAC...

CDS

Download CDS FASTA

882 bp · TkA05G420320|TK1151|CDS

ATGGACAGGGATTCAGCTCTTTCCTCTTGCAACCCAAACAAAGTTGTTGGAACTACTCGGAGATTTAAAAACGAAGGAAAGAACCAGTTTGACTATTCTGGTAATGGGAAGGGCGGTGTAGGTAAATCTTCAACCATAAACTCCATTCTTGGTGAAAGAGCAGTTTCAGTCAGTGCCTTCCAGTCAGATGTACCAAGACCCGTGATGGTATCCCGTTCATGGTCTGGATTCACATTGAACATCATAGACACACCTGGCAT...

Protein

Download Protein FASTA

293 aa · TkA05G420320|TK1151|PROTEIN

MDRDSALSSCNPNKVVGTTRRFKNEGKNQFDYSGNGKGGVGKSSTINSILGERAVSVSAFQSDVPRPVMVSRSWSGFTLNIIDTPGIVEGGYVNDQALDLIKRFLLNKTIDVLLYVDRLDAYRVDNLDKQIVKAITESFGKEIWSKGMVVLTHAQLTPPDCLSYDDFFGKRSEALLKVVESGGRLKKSGIQGNTIPVVLVENSSRCNKNDSDEKVLPNGTAWIPNIVEVITKVATNESQSILVDQKLIDGPNANDRGKPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G420320`
TK1151 ID	TkA05G420320
OH-1004 ID	LXL04_021778
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 88.055 / OH-1004 74.566 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G420320

Location Chr05:104699139-104701709 (-)

Description Similar to TOC34: Translocase of chloroplast 34

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05000`	GTPase involved in protein precursor import into chloroplasts.	Two Toc34 homologues with different properties.2003 · DOI: 10.1021/bi034001q The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins.2003 · DOI: 10.1105/tpc.012955 An outer envelope membrane component of the plastid protein import apparatus plays an essential role in Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02024.x Deletion of core components of the plastid protein import machinery causes differential arrest of embryo development in Arabidopsis thaliana.2006 · DOI: 10.1055/s-2005-873044
`At1g02280`	GTPase involved in protein precursor import into chloroplasts.	Chloroplast protein translocon components atToc159 and atToc33 are not essential for chloroplast biogenesis in guard cells and root cells.2001 · DOI: 10.1104/pp.127.1.90 Two Toc34 homologues with different properties.2003 · DOI: 10.1021/bi034001q Unusual nucleotide-binding properties of the chloroplast protein import receptor, atToc33.2003 · DOI: 10.1016/s0014-5793(03)00478-2 Dimerization of Toc-GTPases at the chloroplast protein import machinery.2003 · DOI: 10.1074/jbc.m305946200 The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins.2003 · DOI: 10.1105/tpc.012955 The roles of toc34 and toc75 in targeting the toc159 preprotein receptor to chloroplasts.2003 · DOI: 10.1074/jbc.m307873200 An outer envelope membrane component of the plastid protein import apparatus plays an essential role in Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02024.x In vivo assessment of the significance of phosphorylation of the Arabidopsis chloroplast protein import receptor, atToc33.2006 · DOI: 10.1016/j.febslet.2005.12.055 Phospho-mimicry mutant of atToc33 affects early development of Arabidopsis thaliana.2007 · DOI: 10.1016/j.febslet.2007.11.071
`At4g02510`	GTPase involved in protein precursor import into chloroplasts.	The major protein import receptor of plastids is essential for chloroplast biogenesis.2000 · DOI: 10.1038/35003214 Dimerization of Toc-GTPases at the chloroplast protein import machinery.2003 · DOI: 10.1074/jbc.m305946200 The roles of toc34 and toc75 in targeting the toc159 preprotein receptor to chloroplasts.2003 · DOI: 10.1074/jbc.m307873200 Functional specialization amongst the Arabidopsis Toc159 family of chloroplast protein import receptors.2004 · DOI: 10.1105/tpc.104.023309 AtToc90, a new GTP-binding component of the Arabidopsis chloroplast protein import machinery.2004 · DOI: 10.1023/b:plan.0000036374.92546.51 Deletion of core components of the plastid protein import machinery causes differential arrest of embryo development in Arabidopsis thaliana.2006 · DOI: 10.1055/s-2005-873044

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021778 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0015031 protein transport Biological Process

GO:0019750 chloroplast localization Biological Process

GO:0045036 protein targeting to chloroplast Biological Process

GO:0045037 protein import into chloroplast stroma Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009707 chloroplast outer membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0003924 GTPase activity Molecular Function

KEGG gene cross-reference

ath:AT1G02280

ath:AT3G16620

ath:AT5G05000

cre:CHLRE_06g252200v5

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.233

Rank 1 · TkA05G420320 · TK1151

Cell membrane0.181

Rank 2 · TkA05G420320 · TK1151

Endoplasmic reticulum0.177

Rank 3 · TkA05G420320 · TK1151

Plastid0.175

Rank 4 · TkA05G420320 · TK1151

Nucleus0.148

Rank 5 · TkA05G420320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04548AIG136-181 aa

PF01926MMR_HSR136-139 aa

PF03193RsgA_GTPase36-89 aa

PF02421FeoB_N36-116 aa

PF00350Dynamin_N40-55 aa

PF00350Dynamin_N78-118 aa

PF03193RsgA_GTPase110-141 aa

PF04548AIG1195-217 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G420320	`PF04548`	AIG1	36	181	7.4e-31	107.8
TkA05G420320	`PF01926`	MMR_HSR1	36	139	1.4e-10	42.0
TkA05G420320	`PF03193`	RsgA_GTPase	36	89	4e-05	24.2
TkA05G420320	`PF02421`	FeoB_N	36	116	0.12	12.6
TkA05G420320	`PF00350`	Dynamin_N	40	55	0.00046	21.0
TkA05G420320	`PF00350`	Dynamin_N	78	118	0.00046	21.0
TkA05G420320	`PF03193`	RsgA_GTPase	110	141	4e-05	24.2
TkA05G420320	`PF04548`	AIG1	195	217	7.4e-31	107.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38906`	Arabidopsis thaliana	sp\|Q38906\|TOC34_ARATH Translocase of chloroplast 34, chloroplastic	59.300%	Swiss-Prot	High
`O23680`	Arabidopsis thaliana	sp\|O23680\|TOC33_ARATH Translocase of chloroplast 33, chloroplastic	57.200%	Swiss-Prot	High
`O81283`	Arabidopsis thaliana	sp\|O81283\|TC159_ARATH Translocase of chloroplast 159, chloroplastic	34.900%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card