TkA05G419220 | RubberDandelionOmics

Gene overview

TkA05G419220

Reference: TK1151 Chr: Chr05 Coordinates: 104420170-104422430 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1623 bp · TkA05G419220|TK1151|cDNA

GACCCACTACCCCACTTTTACCCTGTTAGGCCACGTCCCCACGACACTCACGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATTCGTACAAGATTTCACTACAAAGAACGGCTCATTTTTAAATTGCAACCCACACACACTCCCTCAGTCACTCTTCCTCATATCATCCTCTTCGAAATATAACCGTTTGCACAAATGCTCTCCAAATTTCATACGAACGTAGTCTCGAACTGAAGCTTCA...

CDS

Download CDS FASTA

1326 bp · TkA05G419220|TK1151|CDS

ATGGCGTTCCCGAAGGAGACACCTCAGCCTGTCGTTTCTACAAAACGGCGATTAGATAACGCCGACGACTGTCAACTTGACGTTGACGAATTCAAAAAACCTAAAACGGTGGTGCCGTTGATGCGGAAGTATCCTCTTCCAAAAATCAGGTCAGGCGTACATTTCATCCGTGATTTCCCTCCTGGTTGTGGAACCTTACATGATTCTCTTCAAGTTGAGAGGAAGCCTTTGAAGAAACTAGCTAATATCGACGATTCGAA...

Protein

Download Protein FASTA

441 aa · TkA05G419220|TK1151|PROTEIN

MAFPKETPQPVVSTKRRLDNADDCQLDVDEFKKPKTVVPLMRKYPLPKIRSGVHFIRDFPPGCGTLHDSLQVERKPLKKLANIDDSNIANNNKTVNSQPSEFTKPKAFGFKKPSSTSNHSSKVKFWDPMKQIVHDSPPVSAITEDKKPSKNQHNINSNLKKTNSIENNKLSYASKPPAKVKFYDPTTDVQISKDANTIDSRKRNKILEVMILFESIYTQLYNENKSKQKGEKIAHWRVPTEAANITKQKLKYLPPTKSQG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G419220`
TK1151 ID	TkA05G419220
OH-1004 ID	LXL04_023697
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	32.200
Protein coverage (%)	TK1151 45.125 / OH-1004 27.650 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G419220

Location Chr05:104420170-104422430 (-)

Description Similar to SUVH4: Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35160`	Histone methyltransferase.	No verified direct reference in this release
`At5g47160`	YDG domain-containing protein At5g47160.	No verified direct reference in this release
`At1g73100`	Histone methyltransferase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023697 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0018022 peptidyl-lysine methylation Biological Process

GO:0031048 regulatory ncRNA-mediated heterochromatin formation Biological Process

GO:0032259 methylation Biological Process

GO:0040029 epigenetic regulation of gene expression Biological Process

GO:0044027 negative regulation of gene expression via chromosomal CpG island methylation Biological Process

GO:0000123 histone acetyltransferase complex Cellular Component

GO:0000775 chromosome, centromeric region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific Molecular Function

GO:0003690 double-stranded DNA binding Molecular Function

GO:0008168 methyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G73100

ath:AT2G22740

ath:AT2G35160

ath:AT5G04940

ath:AT5G13960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.869

Rank 1 · TkA05G419220 · TK1151

Cytoplasm0.151

Rank 2 · TkA05G419220 · TK1151

Cell membrane0.052

Rank 3 · TkA05G419220 · TK1151

Endoplasmic reticulum0.038

Rank 4 · TkA05G419220 · TK1151

Plastid0.017

Rank 5 · TkA05G419220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02182SAD_SRA260-420 aa

PF26348SRA_ScoMcrA347-423 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G419220	`PF02182`	SAD_SRA	260	420	1.1e-37	129.8
TkA05G419220	`PF26348`	SRA_ScoMcrA	347	423	0.0045	17.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82175`	Arabidopsis thaliana	sp\|O82175\|SUVH5_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5	37.500%	Swiss-Prot	Low
`Q9LVU3`	Arabidopsis thaliana	sp\|Q9LVU3\|YDG2_ARATH YDG domain-containing protein At5g47160	33.900%	Swiss-Prot	Medium
`Q9C5P4`	Arabidopsis thaliana	sp\|Q9C5P4\|SUVH3_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3	29.900%	Swiss-Prot	Low

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