TkA05G406930 | RubberDandelionOmics

Gene overview

TkA05G406930

Reference: TK1151 Chr: Chr05 Coordinates: 101196301-101200703 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2351 bp · TkA05G406930|TK1151|cDNA

CTTGTTCCAAGTTTACGGCTTTATAAATCTTGACTGGTTTACTCGTGTTCTTACTGTTAATTCTGAATCAAACCCTTTCGTAATCCATTTCAAATTTCTGTATTTCTCTCTCGTAATCATCTACGTCTTCATATAAAACACTCGAAATATATATTTAATCTTCACCAATCTACGTTTGGTGATGACTATGAAATTGTCGTAACAACCTACCAGTGGACTTTTGAAACGATCTTCCACGGTTCCACCGGAAAAAGTCCAAA...

CDS

Download CDS FASTA

1779 bp · TkA05G406930|TK1151|CDS

ATGGGACATTGCTGCAGCAAAGACGCCGTCGCAGACTCTGTCAAAGACGATAGCGCCACCGGATCCACCGCCTTACCCTACAGACCCCGCACTCCGAAACCGCGTACACCCGTAGGTAACGGAGCCAACGGGAGGTCTAGCAGCAACACTCCGAGTCATTCTTTCACCGGAAGCCCATGGCACAATACGTACCCTGCGGGTGTCCCTCCGACGCCGTCACCGGCGAGGACGCCGAGGAGGATGTTCAAGTGGCCGTTCCC...

Protein

Download Protein FASTA

592 aa · TkA05G406930|TK1151|PROTEIN

MGHCCSKDAVADSVKDDSATGSTALPYRPRTPKPRTPVGNGANGRSSSNTPSHSFTGSPWHNTYPAGVPPTPSPARTPRRMFKWPFPPPSPAKPIMSAILKRQGKGNTAATAAIPEDEGGDGERTLDKSFGYQKNFGSKYELGKEVGRGHFGHTCWAKGKKGALKNQQVAVKIISKAKMTTAISIEDVRREVKLLKGLSGHQHMVQFHDAFEDDQNVYIVMELCEGGELLDRILSRGGRYTENDAKSIVVQILSVASFCH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G406930`
TK1151 ID	TkA05G406930
OH-1004 ID	LXL04_021564
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G406930

Location Chr05:101196301-101200703 (+)

Description Similar to CRK4: CDPK-related kinase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24430`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At2g46700`	May play a role in signal transduction pathways that involve calcium as a second messenger (By similarity).	No verified direct reference in this release
`At3g49370`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`At3g50530`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021564 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010150 leaf senescence Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0071215 cellular response to abscisic acid stimulus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004683 calcium/calmodulin-dependent protein kinase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT2G46700

ath:AT3G49370

ath:AT3G50530

ath:AT5G24430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.537

Rank 1 · TkA05G406930 · TK1151

Cytoplasm0.302

Rank 2 · TkA05G406930 · TK1151

Nucleus0.229

Rank 3 · TkA05G406930 · TK1151

Endoplasmic reticulum0.051

Rank 4 · TkA05G406930 · TK1151

Golgi apparatus0.050

Rank 5 · TkA05G406930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase140-402 aa

PF07714PK_Tyr_Ser-Thr141-395 aa

PF03109ABC1166-175 aa

PF01636APH186-231 aa

PF06293Kdo214-290 aa

PF03109ABC1218-301 aa

PF14531Kinase-like247-352 aa

PF01636APH263-306 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G406930	`PF00069`	Pkinase	140	402	6.4e-69	233.0
TkA05G406930	`PF07714`	PK_Tyr_Ser-Thr	141	395	1.8e-31	110.1
TkA05G406930	`PF03109`	ABC1	166	175	0.00055	19.9
TkA05G406930	`PF01636`	APH	186	231	0.0017	18.9
TkA05G406930	`PF06293`	Kdo	214	290	5e-05	23.5
TkA05G406930	`PF03109`	ABC1	218	301	0.00055	19.9
TkA05G406930	`PF14531`	Kinase-like	247	352	0.0093	16.0
TkA05G406930	`PF01636`	APH	263	306	0.0017	18.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIM9`	Arabidopsis thaliana	sp\|Q9FIM9\|CAMK4_ARATH CDPK-related kinase 4	66.300%	Swiss-Prot	High
`Q9ZUZ2`	Arabidopsis thaliana	sp\|Q9ZUZ2\|CAMK3_ARATH CDPK-related kinase 3	67.700%	Swiss-Prot	High
`Q9SG12`	Arabidopsis thaliana	sp\|Q9SG12\|CAMK6_ARATH CDPK-related kinase 6	64.800%	Swiss-Prot	High
`Q9SCS2`	Arabidopsis thaliana	sp\|Q9SCS2\|CAMK5_ARATH CDPK-related kinase 5	64.000%	Swiss-Prot	High

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