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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G406400
Reference: TK1151 Chr: Chr05 Coordinates: 101077533-101079123 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1203 bp · TkA05G406400|TK1151|cDNA

ATGCAAGAACTAAGAAAATCTCGAAAGATTGGAAAGAATCAAGCAAATGTACATAGGAGTGGTGTGATACCTTACCTTCGCCGGAGAAGCTCTCATTGGCCTCTACTAGCGCCGGAAGTCCTTCATCCTTGCCGGAAAACCATCCACAGTCTCTTTCTCATTCCGATAGCAAGCACAAAAAGAAGAGGAAGGCTTCCCTCCCTCGATTACCTAATTAAAGGAGGTGACAGTGGCGGTTTGGTTGGTGGTGGCAGCGGCCG...

CDS

Download CDS FASTA

1203 bp · TkA05G406400|TK1151|CDS

ATGCAAGAACTAAGAAAATCTCGAAAGATTGGAAAGAATCAAGCAAATGTACATAGGAGTGGTGTGATACCTTACCTTCGCCGGAGAAGCTCTCATTGGCCTCTACTAGCGCCGGAAGTCCTTCATCCTTGCCGGAAAACCATCCACAGTCTCTTTCTCATTCCGATAGCAAGCACAAAAAGAAGAGGAAGGCTTCCCTCCCTCGATTACCTAATTAAAGGAGGTGACAGTGGCGGTTTGGTTGGTGGTGGCAGCGGCCG...

Protein

Download Protein FASTA

400 aa · TkA05G406400|TK1151|PROTEIN

MQELRKSRKIGKNQANVHRSGVIPYLRRRSSHWPLLAPEVLHPCRKTIHSLFLIPIASTKRRGRLPSLDYLIKGGDSGGLVGGGSGRNCFSLPLLTFSIFSLPVVRGNDEDGSSDRRGWRQKMRRRQVEVGDRLVAATEDLGDMDFKVGQPIEIIAEGSGFSSSYYTGTVVQLYDDYNGRVAVRYEKVKDYNGNPLVNDLPKENLRPVAPEVDVKIETNDIVNAWDGEWKVEFLVGSRVEIVGFEGGMKDSYYAGTVVGY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G406400
TK1151 IDTkA05G406400
OH-1004 IDLXL04_039589
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)65.400
Protein coverage (%)TK1151 50.250 / OH-1004 21.292
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G406400
LocationChr05:101077533-101079123 (-)
DescriptionSimilar to AGDP1: Protein AGENET DOMAIN (AGD)-CONTAINING P1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039589 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process
GO:0000775 chromosome, centromeric region Cellular Component
GO:0000792 heterochromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0042393 histone binding Molecular Function
GO:0140566 histone reader activity Molecular Function
KEGG gene cross-reference
ath:AT1G09320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.457
Rank 1 · TkA05G406400 · TK1151
Cytoplasm0.366
Rank 2 · TkA05G406400 · TK1151
Cell membrane0.132
Rank 3 · TkA05G406400 · TK1151
Endoplasmic reticulum0.098
Rank 4 · TkA05G406400 · TK1151
Mitochondrion0.056
Rank 5 · TkA05G406400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00018SH3_1142-157 aa
PF05641Agenet149-210 aa
PF18115Tudor_3160-186 aa
PF21743PTM_DIR17_Tudor161-186 aa
PF23327Chromo_MORC2_6th163-186 aa
PF05641Agenet236-293 aa
PF18115Tudor_3247-271 aa
PF23327Chromo_MORC2_6th248-273 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G406400PF00018SH3_11421571.19.6
TkA05G406400PF05641Agenet1492107.7e-1659.0
TkA05G406400PF18115Tudor_31601860.006117.1
TkA05G406400PF21743PTM_DIR17_Tudor1611860.1212.9
TkA05G406400PF23327Chromo_MORC2_6th1631860.2911.6
TkA05G406400PF05641Agenet2362937.7e-1659.0
TkA05G406400PF18115Tudor_32472710.006117.1
TkA05G406400PF23327Chromo_MORC2_6th2482730.2911.6
TkA05G406400PF21743PTM_DIR17_Tudor2492710.1212.9
TkA05G406400PF23327Chromo_MORC2_6th3013270.2911.6
TkA05G406400PF00018SH3_13023201.19.6
TkA05G406400PF05641Agenet3033317.7e-1659.0
TkA05G406400PF00101RuBisCO_small3093500.03714.8
TkA05G406400PF21743PTM_DIR17_Tudor3693840.1212.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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