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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G403800
Reference: TK1151 Chr: Chr05 Coordinates: 100476491-100482096 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3020 bp · TkA05G403800|TK1151|cDNA

GGATAGAAGCCCAACAACTGAAGAAACCCTCACGAAAAAGATCCAAATCTATCGACCTCGGCGACGGGAGGGAGAAGGAGATCGTAACACCATTATCACGAGTGTTTGAAATCGGTCGTCACTCTCACTCATCGACACAGATCCACAGATATTAGGGTTTTTCTTCAAATCGTTCAAGAGCTCAGATTTTTGGTTTCGTAATCAAGACCTAGAAAAAGACGAAGGAGGTGACAATCTGAACAGCAGCAAAGATGAGGATA...

CDS

Download CDS FASTA

2610 bp · TkA05G403800|TK1151|CDS

ATGAGGATAATGATCAAGGGCGGTGTTTGGAAAAACACCGAGGATGAAATCCTCAAAGCCGCGGTTATGAAGTACGGTAAGAATCAGTGGGCTCGTATCTCTTCGTTACTTGTTCGCAAATCGGCTAAGCAGTGTAAAGCTCGGTGGTACGAGTGGCTCGATCCTTCAATTAAGAAGACCGAATGGACAAGAGAAGAAGACGAAAAGCTTCTCCATCTAGCAAAACTCATGCCCACACAATGGAGAACAATCGCCCCAAT...

Protein

Download Protein FASTA

869 aa · TkA05G403800|TK1151|PROTEIN

MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACQKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGMGNSHRKRKRKGIDYNAEIPFEKRPPPGFYDVTDESSVVQQPKFPTTIEELEGERRADKEARLRKQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G403800
TK1151 IDTkA05G403800
OH-1004 IDLXL04_021540
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G403800
LocationChr05:100476491-100482096 (+)
DescriptionSimilar to CDC5: Cell division cycle 5-like protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g09770 Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity.
Virus induced gene silencing of AtCDC5 results in accelerated cell death in Arabidopsis leaves.2007 · DOI: 10.1016/j.plaphy.2006.12.003
Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms.2007 · DOI: 10.1101/gad.1559607
A cdc5+ homolog of a higher plant, Arabidopsis thaliana.1996 · DOI: 10.1073/pnas.93.23.13371

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021540 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000077 DNA damage checkpoint signaling Biological Process
GO:0000086 G2/M transition of mitotic cell cycle Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0006281 DNA repair Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0044344 cellular response to fibroblast growth factor stimulus Biological Process
GO:0045087 innate immune response Biological Process
GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process
GO:0050832 defense response to fungus Biological Process
KEGG gene cross-reference
ath:AT1G09770
bta:767817
hsa:988
mmu:71702
rno:85434
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.958
Rank 1 · TkA05G403800 · TK1151
Cytoplasm0.134
Rank 2 · TkA05G403800 · TK1151
Cell membrane0.016
Rank 3 · TkA05G403800 · TK1151
Mitochondrion0.016
Rank 4 · TkA05G403800 · TK1151
Endoplasmic reticulum0.007
Rank 5 · TkA05G403800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11626Rap1_C7-49 aa
PF00249Myb_DNA-binding8-53 aa
PF23757TPR_HPS5_insect9-43 aa
PF13921Myb_DNA-bind_610-70 aa
PF25996HTH_CLF_N13-28 aa
PF21227Myb_DNA-binding_728-51 aa
PF23757TPR_HPS5_insect48-86 aa
PF00249Myb_DNA-binding59-103 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G403800PF11626Rap1_C7495.27.9
TkA05G403800PF00249Myb_DNA-binding8537.5e-2484.3
TkA05G403800PF23757TPR_HPS5_insect9430.03714.6
TkA05G403800PF13921Myb_DNA-bind_610707.9e-2381.1
TkA05G403800PF25996HTH_CLF_N13280.0913.1
TkA05G403800PF21227Myb_DNA-binding_728510.01815.6
TkA05G403800PF23757TPR_HPS5_insect48860.03714.6
TkA05G403800PF00249Myb_DNA-binding591037.5e-2484.3
TkA05G403800PF13921Myb_DNA-bind_6621117.9e-2381.1
TkA05G403800PF21227Myb_DNA-binding_7621030.01815.6
TkA05G403800PF11626Rap1_C62715.27.9
TkA05G403800PF25996HTH_CLF_N831020.0913.1
TkA05G403800PF29909C45G9_C1401770.07313.6
TkA05G403800PF11831Myb_Cef1441881.2e-49169.7
TkA05G403800PF11831Myb_Cef2502701.2e-49169.7
TkA05G403800PF11831Myb_Cef2953081.2e-49169.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P92948Arabidopsis thalianasp|P92948|CDC5L_ARATH Cell division cycle 5-like protein68.500%Swiss-ProtHigh

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