RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G400920
Reference: TK1151 Chr: Chr05 Coordinates: 99740704-99744960 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3427 bp · TkA05G400920|TK1151|cDNA

GCAACTCATAACTATTTCTATATAAAGTTCACTTCATTGAGGTACGTAAACCACATACATTCAAAGTACTCTCAACAAATAAGCTCATCAATGGCATCTTCTTCATCATCTTCTCCTTCTGCTCCAACCTTTTCTTCTCAGTCATGGAAATATGATGTCTTCCTTAGTTTTAGAGGAGAAGATACCCGCAAGACTTTTGTGGATCATCTCTACTCGGCTCTTCTACAACAAGGAATCGATACATACAAGGATGACGAAAC...

CDS

Download CDS FASTA

3081 bp · TkA05G400920|TK1151|CDS

ATGGCATCTTCTTCATCATCTTCTCCTTCTGCTCCAACCTTTTCTTCTCAGTCATGGAAATATGATGTCTTCCTTAGTTTTAGAGGAGAAGATACCCGCAAGACTTTTGTGGATCATCTCTACTCGGCTCTTCTACAACAAGGAATCGATACATACAAGGATGACGAAACACTTCGTCAGGGCGAATCAATCCGACTATCCCTTATGAAGGCTATTGATGAATCACAGATAGCCGTCATCGTATTCTCAAAAAACTACGC...

Protein

Download Protein FASTA

1026 aa · TkA05G400920|TK1151|PROTEIN

MASSSSSSPSAPTFSSQSWKYDVFLSFRGEDTRKTFVDHLYSALLQQGIDTYKDDETLRQGESIRLSLMKAIDESQIAVIVFSKNYANSSWCLDELAHIMKYKDQRGKNVMPIFYDVEPSEVRKLTKKYGEAFLKHKSENKSKVESWTKALEDAGNLSGWEPKNIANGHESKVIKEIVDKISSRLQLVTSSANENLIGIAARVQSLKAKLQIGSGGVRMIGIWGVGGGGKTTLASSIYDEIYRKFDSCCFIANVREESNR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G400920
TK1151 IDTkA05G400920
OH-1004 IDLXL04_021509
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)58.100
Protein coverage (%)TK1151 99.805 / OH-1004 99.472
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G400920
LocationChr05:99740704-99744960 (+)
DescriptionSimilar to ROQ1: Disease resistance protein Roq1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g11170 Putative disease resistance protein At4g11170. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021509 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
GO:0043531 ADP binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.395
Rank 1 · TkA05G400920 · TK1151
Cytoplasm0.348
Rank 2 · TkA05G400920 · TK1151
Nucleus0.300
Rank 3 · TkA05G400920 · TK1151
Endoplasmic reticulum0.081
Rank 4 · TkA05G400920 · TK1151
Plastid0.045
Rank 5 · TkA05G400920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR20-197 aa
PF13676TIR_223-119 aa
PF29781AtMg0135037-51 aa
PF13676TIR_2133-168 aa
PF29781AtMg01350156-187 aa
PF00004AAA169-210 aa
PF00931NB-ARC202-363 aa
PF13191AAA_16203-307 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G400920PF01582TIR201973.3e-51174.3
TkA05G400920PF13676TIR_2231191.7e-1868.0
TkA05G400920PF29781AtMg0135037510.4111.7
TkA05G400920PF13676TIR_21331681.7e-1868.0
TkA05G400920PF29781AtMg013501561870.4111.7
TkA05G400920PF00004AAA1692100.04614.9
TkA05G400920PF00931NB-ARC2023631.7e-2074.0
TkA05G400920PF13191AAA_162033070.0216.1
TkA05G400920PF25199nSTAND_NTPase52032330.1812.4
TkA05G400920PF00154RecA_N2052520.112.8
TkA05G400920PF01637ATPase_22183110.01316.0
TkA05G400920PF13173AAA_142193140.007417.0
TkA05G400920PF13401AAA_222193120.007817.2
TkA05G400920PF05729NACHT2203429.3e-0523.0
TkA05G400920PF24883NPHP3_N2212740.00517.8
TkA05G400920PF00004AAA2223070.04614.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O82500Arabidopsis thalianasp|O82500|Y4117_ARATH Putative disease resistance protein At4g1117035.300%Swiss-ProtMedium

JBrowse

View in Genome Browser