Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2047 bp · TkA05G400870|TK1151|cDNA
GGGATATATCGAGGTCAATGATGCTCAATAATTTGTTGGGTTCGTTGTGTATGAGTTGGTTGCAAAATTCAATTTTGGATCTTATTCCAGTTTTGTTTTTATTGTCATGATGAATTGTTAGAGGGCAGGGTGGTCTCTATCCAACCCAATAATTCCAAGATTGATGCTGATATATGTTCTCCTCCGTCCCTCTGCTCACACAACCTTATCATTCCTGAAATCTCAGAACCAAAAACGATCCACCGATTGTAGATCTTCAC...
1287 bp · TkA05G400870|TK1151|CDS
ATGGCGTCGGTGTTTTTGTATCACGTGGTGGGGGATCTGACGGTGGGGAAGCCGGAGCTGGTTGAGTTCACCGAGAATGAGACGCTCGAGGCTGCGATTAAGGCGATCGGAGAGTCGACGGAGTGCGGGATAGCAGTTTGGAAGAGGAGGTCGGTGCAGAAGGGTTTAATCGAGAACGCAGAAACGAGGCATCAGAGGTTTGTGGGTATCTTAAATCCGCTCGATATCGTTGCTTTCTTAGCAAGAGATGAGTGTTTGAA...
Protein
Download Protein FASTA428 aa · TkA05G400870|TK1151|PROTEIN
MASVFLYHVVGDLTVGKPELVEFTENETLEAAIKAIGESTECGIAVWKRRSVQKGLIENAETRHQRFVGILNPLDIVAFLARDECLNDQEKALKTPVSKVVVPDNSLMKEVDPGTRLIDALEIMKHGVRRLLVPKSIGWRGMSKRFSILYNGKWLKNIDSNPNLTIPNINRTSSSTTTTPTATTTILRDKFCCLSREDVIRFLIGCLGALAPLPLSSISSLGAINPNYFSIEASSPAIDAAREIPREPSAFAVVDPTPDG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G400870 |
|---|---|
| TK1151 ID | TkA05G400870 |
| OH-1004 ID | LXL04_021500 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G400870 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:99725492-99727863 (+) | |||||||||
| Description | Similar to CBSX6: CBS domain-containing protein CBSX6 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0003006 developmental process involved in reproduction Biological Process GO:0009553 embryo sac development Biological Process GO:0009555 pollen development Biological Process GO:0010183 pollen tube guidance Biological Process GO:0048443 stamen development Biological Process GO:0071456 cellular response to hypoxia Biological Process GO:0000325 plant-type vacuole Cellular Component GO:0005576 extracellular region Cellular Component GO:0005634 nucleus Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G65320 ath:AT1G80090 ath:AT4G27460 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00571CBS21-38 aaPF00571CBS111-133 aaPF00571CBS194-204 aaPF00571CBS224-271 aaPF00571CBS368-416 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G400870 | PF00571 | CBS | 21 | 38 | 1.1e-11 | 45.6 |
| TkA05G400870 | PF00571 | CBS | 111 | 133 | 1.1e-11 | 45.6 |
| TkA05G400870 | PF00571 | CBS | 194 | 204 | 1.1e-11 | 45.6 |
| TkA05G400870 | PF00571 | CBS | 224 | 271 | 1.1e-11 | 45.6 |
| TkA05G400870 | PF00571 | CBS | 368 | 416 | 1.1e-11 | 45.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.