TkA05G386120 | RubberDandelionOmics

Gene overview

TkA05G386120

Reference: TK1151 Chr: Chr05 Coordinates: 95944135-95946122 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

891 bp · TkA05G386120|TK1151|cDNA

CTTATTCAACGCGAGAAATCCTTCTTCAACGAGAAATCCGATTTCGCATATCTCTCTCCCGATTCCTTTTCCTAATTCACGAACGTTCTTCCCGATTTCCATGCCATTAGTCGTCGATTCCCAGAGAATCATATATTTTCACAAAACATTCTGATTTGGGCGTTTAGGGTTAGCAGCGATCGTATCCCAAAGCATTTCGATTAGTGGTTTAGGGTTTTTGATCGTCGTTGGTAGCTGTGAAGTGAGGCATTCCGATTGAA...

CDS

Download CDS FASTA

522 bp · TkA05G386120|TK1151|CDS

ATGATAGGAACGTCAGTTCCTAAAATCTTCCTAAAATCACGCACACAAATTAGGGAACATGATTTCATTCGTATCTTCTCCATCAACAAGCCGGAATTGATCAAATCATATTCAAGGTCGAATCTTTTAAGATTGTCTATGTCAAGTTCGTATCGATTGGATAGCTGGTTCACGTATTCAATTCTATTGTTGTTTCTATGTACCACTGGATTTTGGATGGCGAGGTTGAATGAAGGATTATCACAATTCGATGCAATACT...

Protein

Download Protein FASTA

173 aa · TkA05G386120|TK1151|PROTEIN

MIGTSVPKIFLKSRTQIREHDFIRIFSINKPELIKSYSRSNLLRLSMSSSYRLDSWFTYSILLLFLCTTGFWMARLNEGLSQFDAILIVPMFHMLMEPCMLYCLRDVDTKISYSLLEGKEEESQKAELQTEGDVMKAKTIQLRTSPKVLHATRLEESTEGIREIDWIRLPATY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G386120`
TK1151 ID	TkA05G386120
OH-1004 ID	LXL04_031683
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G386120

Location Chr05:95944135-95946122 (+)

Description Similar to At3g26670: Probable magnesium transporter NIPA8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g26670`	Acts as a Mg(2+) transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031683 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015693 magnesium ion transport Biological Process

GO:0005769 early endosome Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015095 magnesium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G26670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.285

Rank 1 · TkA05G386120 · TK1151

Cytoplasm0.248

Rank 2 · TkA05G386120 · TK1151

Cell membrane0.232

Rank 3 · TkA05G386120 · TK1151

Nucleus0.226

Rank 4 · TkA05G386120 · TK1151

Golgi apparatus0.143

Rank 5 · TkA05G386120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05653Mg_trans_NIPA42-97 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G386120	`PF05653`	Mg_trans_NIPA	42	97	0.099	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RWF4`	Arabidopsis thaliana	sp\|Q8RWF4\|NIPA8_ARATH Probable magnesium transporter NIPA8	67.600%	Swiss-Prot	Low

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