TkA05G364340 | RubberDandelionOmics

Gene overview

TkA05G364340

Reference: TK1151 Chr: Chr05 Coordinates: 90434061-90442274 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2061 bp · TkA05G364340|TK1151|cDNA

TGAGGTTTTAAGTTGGCACATCAAAGGCGAGGCCAAAAAAGGGTTCAGACTTCAGACCATCGCGTACCATACGGTTGCTGTTTCTTGAAGTTAAACCACAGTCGGTAATTCTTGCATCTCGCCGGCGCTGCGTCTCACACGTCACAAGCGACAGTTGACCACTCGAGCTTCTCCGATCAATTAGGGCCTAGGGTTCGCCTTCCCCTGGTTCGGTGGTTCTTCCTGCCTCTTGAGCTGCGTACTGCGGTTCTGTTCCTCCA...

CDS

Download CDS FASTA

963 bp · TkA05G364340|TK1151|CDS

ATGGCTGATGAAGATCATAAAGGCGAACTTGAAGACTCTTCTGCAATGATAGCACTTGGCTCCCTCCTTAAGCTCACTGAAACGCACTTTTGGGTTGATCTTTATACCGGGATGCCATATGATTCAACTTCTATAGAGTGCACTGAAACAGCCAAGGATGAAGTCATTTTCTCAAGCAGGACAGAAAATAGTTGTATATCTGTTGACACAGAGTTGTCTAGGCAGATGAATGAACTAGGACTTCCTCTTTCCTTCTGCAC...

Protein

Download Protein FASTA

320 aa · TkA05G364340|TK1151|PROTEIN

MADEDHKGELEDSSAMIALGSLLKLTETHFWVDLYTGMPYDSTSIECTETAKDEVIFSSRTENSCISVDTELSRQMNELGLPLSFCTNKEKQNGKRKDVVKKVFHTHEETIDEACVNGDEMQMEDSLEHVDGSFDENRKDGSERNEWMTYWDEFYGRNYYYNSVTHESTWEAPPHMEYLDPVYVSNELKSCKIMDDEIEGDVCKEENLGVMQHELGSDVISGEVDNEDEVDKSTSGIDLPNMVLDLPSTTLSQDPYTHDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G364340`
TK1151 ID	TkA05G364340
OH-1004 ID	LXL04_008141
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.000
Protein coverage (%)	TK1151 99.688 / OH-1004 62.351 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA05G364340`
Location	Chr05:90434061-90442274 (+)
Description	Similar to TGS1: Trimethylguanosine synthase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_008141` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000387 spliceosomal snRNP assembly Biological Process GO:0001510 RNA methylation Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0008033 tRNA processing Biological Process GO:0017126 nucleologenesis Biological Process GO:0022613 ribonucleoprotein complex biogenesis Biological Process GO:0032210 regulation of telomere maintenance via telomerase Biological Process GO:0036261 7-methylguanosine cap hypermethylation Biological Process GO:0042308 negative regulation of protein import into nucleus Biological Process GO:0051321 meiotic cell cycle Biological Process GO:0071333 cellular response to glucose stimulus Biological Process GO:0071398 cellular response to fatty acid Biological Process
KEGG gene cross-reference	hsa:96764 mmu:116940 rno:312947 sce:YPL157W spo:2542015 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.904

Rank 1 · TkA05G364340 · TK1151

Cytoplasm0.158

Rank 2 · TkA05G364340 · TK1151

Cell membrane0.049

Rank 3 · TkA05G364340 · TK1151

Endoplasmic reticulum0.026

Rank 4 · TkA05G364340 · TK1151

Golgi apparatus0.018

Rank 5 · TkA05G364340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00397WW146-173 aa

PF23517WW_TCERG1156-176 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G364340	`PF00397`	WW	146	173	6.6e-07	30.0
TkA05G364340	`PF23517`	WW_TCERG1	156	176	0.079	12.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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