TkA05G363360 | RubberDandelionOmics

Gene overview

TkA05G363360

Reference: TK1151 Chr: Chr05 Coordinates: 90197493-90198651 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

852 bp · TkA05G363360|TK1151|cDNA

TGTACCCTTCTCATTCACAAGACTATCCCCCCAAAACAAGCATCACCGCCACCATCAGCTCCTCGCTCCTCCTTACATCACCAACAGCCGCCGTATGCCACCGGTGTTCCAGCTCAATACGTGGCTCCTCATCCCATCAACGGAAAATGGTCCAGTAGCCTTTGTGCCTGCTGCTCCGATGTCCCCAACTGTTGCTTAACATGTTGGTGTCCATGTATTACTTTTGGACAAATAGCTGAGATTGTTGATAAGGGGAATAC...

CDS

Download CDS FASTA

552 bp · TkA05G363360|TK1151|CDS

TGTACCCTTCTCATTCACAAGACTATCCCCCCAAAACAAGCATCACCGCCACCATCAGCTCCTCGCTCCTCCTTACATCACCAACAGCCGCCGTATGCCACCGGTGTTCCAGCTCAATACGTGGCTCCTCATCCCATCAACGGAAAATGGTCCAGTAGCCTTTGTGCCTGCTGCTCCGATGTCCCCAACTGTTGCTTAACATGTTGGTGTCCATGTATTACTTTTGGACAAATAGCTGAGATTGTTGATAAGGGGAATAC...

Protein

Download Protein FASTA

183 aa · TkA05G363360|TK1151|PROTEIN

CTLLIHKTIPPKQASPPPSAPRSSLHHQQPPYATGVPAQYVAPHPINGKWSSSLCACCSDVPNCCLTCWCPCITFGQIAEIVDKGNTPCAVHGALYAIIAAFTCCGCMYSCIFRTKMRSQYGLRETPCNDCLVHCFCEPCALCQEYRELQHSGFDISIGWQGNMERQNHLVQMPPVAPGGMYR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G363360`
TK1151 ID	TkA05G363360
OH-1004 ID	LXL04_021195
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.200
Protein coverage (%)	TK1151 95.082 / OH-1004 95.337 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G363360

Location Chr05:90197493-90198651 (-)

Description Similar to PCR2: Protein PLANT CADMIUM RESISTANCE 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g14870`	Zinc transporter acting in both zinc extrusion and long-distance zinc transport.	Arabidopsis PCR2 is a zinc exporter involved in both zinc extrusion and long-distance zinc transport.2010 · DOI: 10.1105/tpc.109.070185
`At5g35525`	May be involved in heavy metals transport.	No verified direct reference in this release
`At1g68610`	May be involved in heavy metals transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021195 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G14870

ath:AT1G14880

ath:AT5G35525

zma:100284761

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.495

Rank 1 · TkA05G363360 · TK1151

Cytoplasm0.255

Rank 2 · TkA05G363360 · TK1151

Endoplasmic reticulum0.165

Rank 3 · TkA05G363360 · TK1151

Golgi apparatus0.151

Rank 4 · TkA05G363360 · TK1151

Lysosome / Vacuole0.144

Rank 5 · TkA05G363360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04749PLAC850-148 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G363360	`PF04749`	PLAC8	50	148	9.6e-35	120.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LQU4`	Arabidopsis thaliana	sp\|Q9LQU4\|PCR2_ARATH Protein PLANT CADMIUM RESISTANCE 2	54.400%	Swiss-Prot	High
`P0CW97`	Arabidopsis thaliana	sp\|P0CW97\|PCR3_ARATH Protein PLANT CADMIUM RESISTANCE 3	56.300%	Swiss-Prot	High
`Q9SX24`	Arabidopsis thaliana	sp\|Q9SX24\|PCR11_ARATH Protein PLANT CADMIUM RESISTANCE 11	58.300%	Swiss-Prot	High

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