TkA05G363130 | RubberDandelionOmics

Gene overview

TkA05G363130

Reference: TK1151 Chr: Chr05 Coordinates: 90118310-90119264 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

843 bp · TkA05G363130|TK1151|cDNA

ATGCATATCCCTTTGGCCTCTACAGACTGGTGGCAACAATTGAACGAGATTGGCGCACCAAACACCTTCGGCACCCCTATCAATATGAAGATTAGAGAAACCAAGGACCTTAGAGAAACTAAACTAATGGCACAAATTAGCAAGGAAATCGGCTTCCAAATTGAGGTAAACAATCCCATCCTCCGAGCCACTATAGGCGAAACCGGGGAGGAGGTGAAAGTTAGGTGGGTAAGGAAATTAAAAACACTTCATAAAGCCAA...

CDS

Download CDS FASTA

843 bp · TkA05G363130|TK1151|CDS

ATGCATATCCCTTTGGCCTCTACAGACTGGTGGCAACAATTGAACGAGATTGGCGCACCAAACACCTTCGGCACCCCTATCAATATGAAGATTAGAGAAACCAAGGACCTTAGAGAAACTAAACTAATGGCACAAATTAGCAAGGAAATCGGCTTCCAAATTGAGGTAAACAATCCCATCCTCCGAGCCACTATAGGCGAAACCGGGGAGGAGGTGAAAGTTAGGTGGGTAAGGAAATTAAAAACACTTCATAAAGCCAA...

Protein

Download Protein FASTA

280 aa · TkA05G363130|TK1151|PROTEIN

MHIPLASTDWWQQLNEIGAPNTFGTPINMKIRETKDLRETKLMAQISKEIGFQIEVNNPILRATIGETGEEVKVRWVRKLKTLHKANFIGIQETQLTEASRIDITGWGNHDCEFEGVDSSGRSGGLVSIWNPQYFQKTKTIKARHYIITVGKWIEGTMESITGNKKLKPRKWLLFGDFNAVGRSDEMFNSLYCPISASAFNNFIHEAELNNFNMGGEKFTYMTRVGAKLSKLDRFLACTDFLDAFPSVVITAHPRELSDH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G363130`
TK1151 ID	TkA05G363130
OH-1004 ID	LXL04_000683
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	44.500
Protein coverage (%)	TK1151 87.143 / OH-1004 22.154 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA05G363130`
Location	Chr05:90118310-90119264 (+)
Description	Similar to At1g58430: GDSL esterase/lipase At1g58430
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000683` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0016042 lipid catabolic process Biological Process GO:0005576 extracellular region Cellular Component GO:0009507 chloroplast Cellular Component GO:0016788 hydrolase activity, acting on ester bonds Molecular Function
KEGG gene cross-reference	ath:AT1G58430 ath:AT2G24560 ath:AT2G30220 ath:AT2G31540 ath:AT2G31550 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.563

Rank 1 · TkA05G363130 · TK1151

Nucleus0.255

Rank 2 · TkA05G363130 · TK1151

Plastid0.163

Rank 3 · TkA05G363130 · TK1151

Cell membrane0.096

Rank 4 · TkA05G363130 · TK1151

Endoplasmic reticulum0.054

Rank 5 · TkA05G363130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03372Exo_endo_phos84-260 aa

PF14529Exo_endo_phos_2158-263 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G363130	`PF03372`	Exo_endo_phos	84	260	6.1e-09	36.7
TkA05G363130	`PF14529`	Exo_endo_phos_2	158	263	0.00038	21.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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