TkA05G360910 | RubberDandelionOmics

Gene overview

TkA05G360910

Reference: TK1151 Chr: Chr05 Coordinates: 89604975-89606237 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

668 bp · TkA05G360910|TK1151|cDNA

GGTCTGAAACTTCACTTAGTGTCATCACATGACCTGTTTCGCTTTGAGTTCTGGGTAAATGAAGATTATCAAGTTGTGATTGTATCTGTAAAGTCTGATACAGGCACTTCTGAGATTTTCGGCAACATTGCTGATCCAAGACAACAATCACTTTTCTTTTGCCGTAAGCCATTGAGTCGCAAGGAACCAGAGGACCCAACTTTAAAAACCAATCACGTGCTGCCATCTGTATTGGATTCTGACGTCCCTGCAACTCTTGC...

CDS

Download CDS FASTA

570 bp · TkA05G360910|TK1151|CDS

GGTCTGAAACTTCACTTAGTGTCATCACATGACCTGTTTCGCTTTGAGTTCTGGGTAAATGAAGATTATCAAGTTGTGATTGTATCTGTAAAGTCTGATACAGGCACTTCTGAGATTTTCGGCAACATTGCTGATCCAAGACAACAATCACTTTTCTTTTGCCGTAAGCCATTGAGTCGCAAGGAACCAGAGGACCCAACTTTAAAAACCAATCACGTGCTGCCATCTGTATTGGATTCTGACGTCCCTGCAACTCTTGC...

Protein

Download Protein FASTA

189 aa · TkA05G360910|TK1151|PROTEIN

GLKLHLVSSHDLFRFEFWVNEDYQVVIVSVKSDTGTSEIFGNIADPRQQSLFFCRKPLSRKEPEDPTLKTNHVLPSVLDSDVPATLANLRGDSEPMEIDIYSPNAKDVTGPESPQTLPGTKLLQFAKTRKLSVERSNPRNHALLQKRKFFHSHRAQGLGVAVHEIISSIYHMGEFKRSRKTTCYWIRVP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G360910`
TK1151 ID	TkA05G360910
OH-1004 ID	LXL04_012085
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.000
Protein coverage (%)	TK1151 84.656 / OH-1004 25.363 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G360910

Location Chr05:89604975-89606237 (-)

Description Similar to EMF2: Polycomb group protein EMBRYONIC FLOWER 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`UniProt: Q8L6Y4`	Polycomb group (PcG) protein.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0306800`	Polycomb group (PcG) protein.	Expression, imprinting, and evolution of rice homologs of the polycomb group genes.2009 · DOI: 10.1093/mp/ssp036

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012085 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006325 chromatin organization Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009409 response to cold Biological Process

GO:0009908 flower development Biological Process

GO:0009910 negative regulation of flower development Biological Process

GO:0010048 vernalization response Biological Process

GO:0030154 cell differentiation Biological Process

GO:0031507 heterochromatin formation Biological Process

GO:0048586 regulation of long-day photoperiodism, flowering Biological Process

GO:0141044 epigenetic programming in the endosperm Biological Process

GO:0005634 nucleus Cellular Component

GO:0005677 chromatin silencing complex Cellular Component

KEGG gene cross-reference

ath:AT4G16845

ath:AT5G51230

dosa:Os04g0162100

dosa:Os09g0306800

osa:4335036

osa:4346674

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.855

Rank 1 · TkA05G360910 · TK1151

Cytoplasm0.234

Rank 2 · TkA05G360910 · TK1151

Mitochondrion0.034

Rank 3 · TkA05G360910 · TK1151

Cell membrane0.024

Rank 4 · TkA05G360910 · TK1151

Endoplasmic reticulum0.013

Rank 5 · TkA05G360910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23320Zn_SUZ121-32 aa

PF09733VEFS-Box139-159 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G360910	`PF23320`	Zn_SUZ12	1	32	7.9e-10	39.1
TkA05G360910	`PF09733`	VEFS-Box	139	159	0.22	12.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L6Y4`	Arabidopsis thaliana	sp\|Q8L6Y4\|EMF2_ARATH Polycomb group protein EMBRYONIC FLOWER 2	37.200%	Swiss-Prot	Medium
`Q69KN0`	Oryza sativa subsp. japonica	sp\|Q69KN0\|EMF2B_ORYSJ Polycomb group protein EMF2B	40.600%	Swiss-Prot	Medium

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