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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G360400
Reference: TK1151 Chr: Chr05 Coordinates: 89469404-89472653 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2997 bp · TkA05G360400|TK1151|cDNA

TGATCAAAAAAAAAAAAAAAAAAAAAAATGGCCACAAAGAGCCGTTGCAGCTCGTTCTCCGGAAGAAAGGGGCACAACGCCCTCGACAACGGCGTCCTATGGGGGCGGTGTTTCTTATCGACGACGGCGTCGTCCCTTGGCCACATCATCAGCCCGTCGTGCAACGGGAACACCCATACCGGGCAGCCTAAGATTTAAAGGCAGCTACATGTAACATGATGATATAATTAAAAGTTATAACCCCTTCTCAATCACGATGG...

CDS

Download CDS FASTA

1593 bp · TkA05G360400|TK1151|CDS

ATGACTATGGAATCATCATCATCCAAATCACTGCGATTCATCTCGCATCAATCGTTCTTCTCGGCGGTCCGATCAGGCGACCTTGAATCACTAAAACTGATCGTAAACGATGAAGATTCCGACTCAGCGTCGGCGTCTGCTCTAATGGCGATGCAAACCGAGGCCGGCGAGACGGCGCTGTACATCGCCGCTGAGAACAACTTCCAGGAAGTGTTTAATTACTTACTCAAGTTCTGTGATCTTGAAACTGTGAAGATTAG...

Protein

Download Protein FASTA

530 aa · TkA05G360400|TK1151|PROTEIN

MTMESSSSKSLRFISHQSFFSAVRSGDLESLKLIVNDEDSDSASASALMAMQTEAGETALYIAAENNFQEVFNYLLKFCDLETVKIRSKSDFNAFHIAAKLGHLGIVNELLRLYPELCKVCNTTNTSPLYTAAVKDHLNVVNAMLDADVTCIRIVRKNGKTALHTTARCGQTNMVKTLIERDPEIVPIKDKKGQTALHMAVKGQNTTVVDELLTANHSILNERDKFGNTAIHIATRKCRSQIVNLLLSFTTISVNVINNQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G360400
TK1151 IDTkA05G360400
OH-1004 IDLXL04_021170
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G360400
LocationChr05:89469404-89472653 (-)
DescriptionSimilar to At2g01680: Ankyrin repeat-containing protein At2g01680
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g01680 Ankyrin repeat-containing protein At2g01680. No verified direct reference in this release
At3g12360 Involved in salt stress tolerance.
ITN1, a novel gene encoding an ankyrin-repeat protein that affects the ABA-mediated production of reactive oxygen species and is involved in salt-stress tolerance in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03614.x
At5g02620 Ankyrin repeat-containing protein At5g02620. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0837000 Involved in salt stress tolerance. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021170 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000281 mitotic cytokinesis Biological Process
GO:0007009 plasma membrane organization Biological Process
GO:0007165 signal transduction Biological Process
GO:0007528 neuromuscular junction development Biological Process
GO:0009651 response to salt stress Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0010650 positive regulation of cell communication by electrical coupling Biological Process
GO:0010765 positive regulation of sodium ion transport Biological Process
GO:0010960 magnesium ion homeostasis Biological Process
GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity Biological Process
GO:0032507 maintenance of protein location in cell Biological Process
GO:0034112 positive regulation of homotypic cell-cell adhesion Biological Process
KEGG gene cross-reference
ath:AT2G01680
ath:AT3G12360
ath:AT5G02620
dosa:Os01g0837000
mmu:11735
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.833
Rank 1 · TkA05G360400 · TK1151
Cytoplasm0.081
Rank 2 · TkA05G360400 · TK1151
Endoplasmic reticulum0.078
Rank 3 · TkA05G360400 · TK1151
Nucleus0.052
Rank 4 · TkA05G360400 · TK1151
Lysosome / Vacuole0.037
Rank 5 · TkA05G360400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13606Ank_319-36 aa
PF13637Ank_420-76 aa
PF12796Ank_221-112 aa
PF00023Ank22-36 aa
PF24521Ank_KRIT141-80 aa
PF13857Ank_553-76 aa
PF00023Ank56-81 aa
PF13606Ank_356-79 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G360400PF13606Ank_319362e-2174.2
TkA05G360400PF13637Ank_420769e-2174.2
TkA05G360400PF12796Ank_2211123.9e-50169.1
TkA05G360400PF00023Ank22361.4e-2898.1
TkA05G360400PF24521Ank_KRIT141801.3e-0732.2
TkA05G360400PF13857Ank_553767.3e-2277.9
TkA05G360400PF00023Ank56811.4e-2898.1
TkA05G360400PF13606Ank_356792e-2174.2
TkA05G360400PF24521Ank_KRIT1851471.3e-0732.2
TkA05G360400PF13857Ank_5891297.3e-2277.9
TkA05G360400PF13637Ank_4891079e-2174.2
TkA05G360400PF12796Ank_2901493.9e-50169.1
TkA05G360400PF00023Ank921111.4e-2898.1
TkA05G360400PF13606Ank_3931132e-2174.2
TkA05G360400PF12796Ank_21201853.9e-50169.1
TkA05G360400PF13857Ank_51211507.3e-2277.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZU96Arabidopsis thalianasp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g0168073.700%Swiss-ProtHigh
Q9C7A2Arabidopsis thalianasp|Q9C7A2|ITN1_ARATH Ankyrin repeat-containing protein ITN140.200%Swiss-ProtMedium
Q6AWW5Arabidopsis thalianasp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g0262039.500%Swiss-ProtLow
A2CIR5Oryza sativa subsp. japonicasp|A2CIR5|NPR4_ORYSJ Ankyrin repeat-containing protein NPR438.500%Swiss-ProtMedium

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