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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G355380
Reference: TK1151 Chr: Chr05 Coordinates: 88075287-88076923 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1542 bp · TkA05G355380|TK1151|cDNA

ATGTTCTACAGGTGTATGACGAAATGCCTCAAAGAACATGACAACGTTGTCTTTTCAATTGTAGTCAAGGCATGTACAAAGGTGCGAGACATCAATGAAGGGAAGAAAATACATTGTCATATAGTGAAAGCAGGAAGTCCCGATGGTTTTGTTTTAACTAGTCTTATAGATATGTACGCCAAATGTGGTCACATTAACTGTTCACGAAAAGTCTTTGATGATATTATTGATAAAGATGTTGTTTCTTGGACTTCCATGAT...

CDS

Download CDS FASTA

1542 bp · TkA05G355380|TK1151|CDS

ATGTTCTACAGGTGTATGACGAAATGCCTCAAAGAACATGACAACGTTGTCTTTTCAATTGTAGTCAAGGCATGTACAAAGGTGCGAGACATCAATGAAGGGAAGAAAATACATTGTCATATAGTGAAAGCAGGAAGTCCCGATGGTTTTGTTTTAACTAGTCTTATAGATATGTACGCCAAATGTGGTCACATTAACTGTTCACGAAAAGTCTTTGATGATATTATTGATAAAGATGTTGTTTCTTGGACTTCCATGAT...

Protein

Download Protein FASTA

513 aa · TkA05G355380|TK1151|PROTEIN

MFYRCMTKCLKEHDNVVFSIVVKACTKVRDINEGKKIHCHIVKAGSPDGFVLTSLIDMYAKCGHINCSRKVFDDIIDKDVVSWTSMIVSYVQNGCPKEAFMLFNKMRSGLIKGNQHTFGSIVSACTKLRALHQGKWVHGYVIKNGINLNSHIVSSLVDMYVKCVAILDARSVFNEHQEAMIGCPSVDVVTWTAMIVGYSQNGYPNEALALFIDKNWIGILPNSVTISSVISACSQLGDSQLGKVIHSLGVKLGLEDVNVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G355380
TK1151 IDTkA05G355380
OH-1004 IDLXL04_021120
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)98.800
Protein coverage (%)TK1151 100.000 / OH-1004 72.355
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G355380
LocationChr05:88075287-88076923 (-)
DescriptionSimilar to PCMP-E47: Pentatricopeptide repeat-containing protein At2g03380, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g03380 Pentatricopeptide repeat-containing protein At2g03380, mitochondrial. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At3g01580 Putative pentatricopeptide repeat-containing protein At3g01580. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release
At3g16610 Pentatricopeptide repeat-containing protein At3g16610. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021120 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009451 RNA modification Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010305 leaf vascular tissue pattern formation Biological Process
GO:0010588 cotyledon vascular tissue pattern formation Biological Process
GO:0016556 mRNA modification Biological Process
GO:0048366 leaf development Biological Process
GO:1900865 chloroplast RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G11290
ath:AT2G03380
ath:AT4G18750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.694
Rank 1 · TkA05G355380 · TK1151
Plastid0.160
Rank 2 · TkA05G355380 · TK1151
Nucleus0.038
Rank 3 · TkA05G355380 · TK1151
Cytoplasm0.034
Rank 4 · TkA05G355380 · TK1151
Peroxisome0.008
Rank 5 · TkA05G355380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_214-61 aa
PF23276TPR_2414-33 aa
PF17177PPR_long15-71 aa
PF01535PPR16-45 aa
PF12854PPR_146-74 aa
PF13041PPR_248-76 aa
PF17049AEP151-92 aa
PF18768RNPP_C51-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G355380PF13041PPR_214617.2e-59196.4
TkA05G355380PF23276TPR_2414331.7e-1144.9
TkA05G355380PF17177PPR_long15711.2e-0732.0
TkA05G355380PF01535PPR16452e-60197.6
TkA05G355380PF12854PPR_146741e-33115.5
TkA05G355380PF13041PPR_248767.2e-59196.4
TkA05G355380PF17049AEP151921.6e-0834.7
TkA05G355380PF18768RNPP_C51800.0005320.3
TkA05G355380PF01535PPR52792e-60197.6
TkA05G355380PF11099M11L52920.007717.3
TkA05G355380PF13428TPR_1454770.009317.3
TkA05G355380PF13812PPR_3741266.8e-2174.8
TkA05G355380PF13041PPR_2781277.2e-59196.4
TkA05G355380PF12854PPR_1791071e-33115.5
TkA05G355380PF01535PPR811082e-60197.6
TkA05G355380PF17177PPR_long831631.2e-0732.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZQ74Arabidopsis thalianasp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380, mitochondrial51.200%Swiss-ProtHigh
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic38.100%Swiss-ProtMedium
Q9SS97Arabidopsis thalianasp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g0158036.000%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399035.800%Swiss-ProtMedium
Q9LUS3Arabidopsis thalianasp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g1661036.100%Swiss-ProtMedium

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