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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G355260
Reference: TK1151 Chr: Chr05 Coordinates: 88042053-88043558 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1506 bp · TkA05G355260|TK1151|cDNA

ATGAAGCAATTCAAACAAGTTCATGGTCAATCAATCACATGTGGCCTTGGAGAAAATCACTATGCTTTGAGCAGGTTATTAGCTTTCTGTTCACAACCTCATCATCATGGCAGTTTATCACACGGCTTAAACATCTTACAACACGTTCAACAACCCTCCAATTGCTTATACAACACCATGATCAAAGCGTCTCTGCTTCGTAACGAACTAAACACGTCGTTTCGCTTATACAAACGCCTGCTTGAAAACGGCATGCATCC...

CDS

Download CDS FASTA

1506 bp · TkA05G355260|TK1151|CDS

ATGAAGCAATTCAAACAAGTTCATGGTCAATCAATCACATGTGGCCTTGGAGAAAATCACTATGCTTTGAGCAGGTTATTAGCTTTCTGTTCACAACCTCATCATCATGGCAGTTTATCACACGGCTTAAACATCTTACAACACGTTCAACAACCCTCCAATTGCTTATACAACACCATGATCAAAGCGTCTCTGCTTCGTAACGAACTAAACACGTCGTTTCGCTTATACAAACGCCTGCTTGAAAACGGCATGCATCC...

Protein

Download Protein FASTA

501 aa · TkA05G355260|TK1151|PROTEIN

MKQFKQVHGQSITCGLGENHYALSRLLAFCSQPHHHGSLSHGLNILQHVQQPSNCLYNTMIKASLLRNELNTSFRLYKRLLENGMHPDNYTLPYILKACAYMESFRLGELVHGHCLQLGFLFDSFVGNTLIMMYSLFGNMENARYVFDEMPTHCVISWTVLISGYAKIGDIDLARVTFDEAPVKDRGIWGSIISGYVQNNCFKEGLHMFRLMQSTNIIPDEAILVSILGACAHLGTLEIGIWIHKQLNAIKLRSSVKLTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G355260
TK1151 IDTkA05G355260
OH-1004 IDLXL04_021116
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.200
Protein coverage (%)TK1151 88.224 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G355260
LocationChr05:88042053-88043558 (+)
DescriptionSimilar to PCMP-E51: Putative pentatricopeptide repeat-containing protein At3g15930
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g20540 Pentatricopeptide repeat-containing protein At2g20540. No verified direct reference in this release
At2g22410 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial. No verified direct reference in this release
At3g15930 Putative pentatricopeptide repeat-containing protein At3g15930. No verified direct reference in this release
At1g31920 Pentatricopeptide repeat-containing protein At1g31920. No verified direct reference in this release
At5g66520 Pentatricopeptide repeat-containing protein At5g66520. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021116 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G20540
ath:AT3G15930
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.654
Rank 1 · TkA05G355260 · TK1151
Plastid0.188
Rank 2 · TkA05G355260 · TK1151
Nucleus0.043
Rank 3 · TkA05G355260 · TK1151
Cytoplasm0.036
Rank 4 · TkA05G355260 · TK1151
Cell membrane0.006
Rank 5 · TkA05G355260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12921ATP1335-51 aa
PF28771RMD9_mid50-84 aa
PF13041PPR_252-100 aa
PF12854PPR_152-63 aa
PF23276TPR_2454-97 aa
PF13812PPR_355-99 aa
PF01535PPR57-84 aa
PF17177PPR_long58-100 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G355260PF12921ATP1335512e-0525.2
TkA05G355260PF28771RMD9_mid50840.00119.6
TkA05G355260PF13041PPR_2521003.7e-40136.5
TkA05G355260PF12854PPR_152631e-1661.0
TkA05G355260PF23276TPR_2454971.1e-0732.5
TkA05G355260PF13812PPR_355995.4e-1143.1
TkA05G355260PF01535PPR57842.1e-38128.6
TkA05G355260PF17177PPR_long581000.0001122.4
TkA05G355260PF26713TPR_RPO41_N59820.1112.8
TkA05G355260PF13428TPR_1463890.004518.3
TkA05G355260PF29070MSC6_N661066.2e-0626.3
TkA05G355260PF12921ATP13821062e-0525.2
TkA05G355260PF12854PPR_183911e-1661.0
TkA05G355260PF29978ATP18_TPR831110.1213.0
TkA05G355260PF13812PPR_31191505.4e-1143.1
TkA05G355260PF13041PPR_21251513.7e-40136.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SIL5Arabidopsis thalianasp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g2054039.900%Swiss-ProtMedium
Q9SJZ3Arabidopsis thalianasp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial35.100%Swiss-ProtMedium
Q9LSB8Arabidopsis thalianasp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g1593040.100%Swiss-ProtMedium
Q9C6T2Arabidopsis thalianasp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g3192033.000%Swiss-ProtMedium
Q9FJY7Arabidopsis thalianasp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g6652038.900%Swiss-ProtMedium

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