TkA05G351190 | RubberDandelionOmics

Gene overview

TkA05G351190

Reference: TK1151 Chr: Chr05 Coordinates: 86982784-86985109 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1739 bp · TkA05G351190|TK1151|cDNA

GTACACTATTCTCATTACAGTACACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGATACGTACATTACATACACTTTTATGTATGTATAGGTTGTGTGTATATATATGTATTATGTGGGAGGTGTTGTAAGCTTGCATGACTACCTTACCTCTCACTCACTCTTTCTCTCTAGGATATTCATATCTTGAAATTTGAATAACTCCTTCAATCTTCTCTTATACACATAAACATAAACAAATAGTTAATTAAGC...

CDS

Download CDS FASTA

1071 bp · TkA05G351190|TK1151|CDS

ATGGAAGTGGAAATGGATGCTTCAGGTGTAAATCATCATCATCATCTTCATCATCATCAGCAGCAGCAGGAATTGTCTTCACAAACACTAGAGAGCATGTTGGTATGCACAAAAGCACAACAAGACAACAAGAAACCAAGACCAGCAGAACATGGTCTAAAGTGTCCAAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAGTCTCACTCAACCTCGGTACTTTTGTAAATCCTGTCGAAGGTACTG...

Protein

Download Protein FASTA

356 aa · TkA05G351190|TK1151|PROTEIN

MEVEMDASGVNHHHHLHHHQQQQELSSQTLESMLVCTKAQQDNKKPRPAEHGLKCPRCDSINTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSTSSSATSSTSTSSSALSKIRGTHEHLLNHHHHHNQPLSSGSGNPNLLSGLTHLPYDSTCTDLSLAFARLQSQANGHLGFDRLDQFDQNDHLLPNSSNTATAHGDHLGFLDAIRGRFLGNAPNGYHNMFGNGEMGSVENGGILMGSDQDQE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G351190`
TK1151 ID	TkA05G351190
OH-1004 ID	LXL04_021076
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G351190

Location Chr05:86982784-86985109 (+)

Description Similar to DOF2.1: Dof zinc finger protein DOF2.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g60200`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y
`At3g45610`	Transcription factor that negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of abscisic acid-related genes.	Arabidopsis thaliana DOF6 negatively affects germination in non-after-ripened seeds and interacts with TCP14.2012 · DOI: 10.1093/jxb/err388 Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y
`At2g28510`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0726300`	Transcription factor that may transactivate seed storage protein genes in developing seeds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021076 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0048364 root development Biological Process

GO:0090057 root radial pattern formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G51700

ath:AT2G28510

ath:AT3G45610

ath:AT5G60200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.977

Rank 1 · TkA05G351190 · TK1151

Cytoplasm0.089

Rank 2 · TkA05G351190 · TK1151

Cell membrane0.020

Rank 3 · TkA05G351190 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA05G351190 · TK1151

Plastid0.008

Rank 5 · TkA05G351190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23451Zn_ribbon_PaaD23-37 aa

PF23451Zn_ribbon_PaaD41-84 aa

PF02701Zn_ribbon_Dof52-107 aa

PF10500SR-25104-127 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G351190	`PF23451`	Zn_ribbon_PaaD	23	37	0.012	16.0
TkA05G351190	`PF23451`	Zn_ribbon_PaaD	41	84	0.012	16.0
TkA05G351190	`PF02701`	Zn_ribbon_Dof	52	107	6.9e-34	116.5
TkA05G351190	`PF10500`	SR-25	104	127	0.95	9.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84TE9`	Arabidopsis thaliana	sp\|Q84TE9\|DOF53_ARATH Dof zinc finger protein DOF5.3	86.200%	Swiss-Prot	Low
`Q9M1E6`	Arabidopsis thaliana	sp\|Q9M1E6\|DOF32_ARATH Dof zinc finger protein DOF3.2	46.600%	Swiss-Prot	Low
`Q8LE43`	Arabidopsis thaliana	sp\|Q8LE43\|DOF21_ARATH Dof zinc finger protein DOF2.1	35.300%	Swiss-Prot	Medium
`Q6Z345`	Oryza sativa subsp. japonica	sp\|Q6Z345\|DOF4_ORYSJ Dof zinc finger protein 4	80.300%	Swiss-Prot	Low

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