Gene Card
Gene overview
cDNA / CDS / Protein Sequences
782 bp · TkA05G350460|TK1151|cDNA
TTGGGTTAATCTGAGAGATCCATATTTTGATAATATCACATTACCAATTCGTTAGCACAGGAATTCATGGAAGCGAAGATCGGAAAGTTCTTTGAATCCGTAGGCGACTTCTTCTCTGGCGGTGATCAGATTCCTTGGTGCGACTCCGACATTGTCGTTGGTTGTGAGCGCGAGGTTGCTGAAGCTGAGAAAGGTTCTAATAATGAACAAAAAATTGAGAGTCGCATGCGGTTGTCTTGGGTTCTTGTTCATTCAAAACG...
498 bp · TkA05G350460|TK1151|CDS
ATGGAAGCGAAGATCGGAAAGTTCTTTGAATCCGTAGGCGACTTCTTCTCTGGCGGTGATCAGATTCCTTGGTGCGACTCCGACATTGTCGTTGGTTGTGAGCGCGAGGTTGCTGAAGCTGAGAAAGGTTCTAATAATGAACAAAAAATTGAGAGTCGCATGCGGTTGTCTTGGGTTCTTGTTCATTCAAAACGACCTGATGATGTACAACGTGGGATAGCAATGCTTGAAGCTTCATTGGCAGGTAGTAACAGCCCATT...
Protein
Download Protein FASTA165 aa · TkA05G350460|TK1151|PROTEIN
MEAKIGKFFESVGDFFSGGDQIPWCDSDIVVGCEREVAEAEKGSNNEQKIESRMRLSWVLVHSKRPDDVQRGIAMLEASLAGSNSPLQAREKMYLLAVGYYRSGDYSKSRQLVDRCLEAAPEWRQAISLKKAIEDHIKKDGVIGIGIAATTIGILSGVVAAMARR
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G350460 |
|---|---|
| TK1151 ID | TkA05G350460 |
| OH-1004 ID | LXL04_021074 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.400 |
| Protein coverage (%) | TK1151 99.394 / OH-1004 24.886Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G350460 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:86816106-86817843 (+) | |||||||||
| Description | Similar to PCMP-H28: Pentatricopeptide repeat-containing protein At4g21065 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006397 mRNA processing Biological Process GO:0009451 RNA modification Biological Process GO:0016554 cytidine to uridine editing Biological Process GO:0016556 mRNA modification Biological Process GO:0031425 chloroplast RNA processing Biological Process GO:1900865 chloroplast RNA modification Biological Process GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0003723 RNA binding Molecular Function GO:0003729 mRNA binding Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0008270 zinc ion binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G59720 ath:AT2G02980 ath:AT4G21065 ath:AT5G48910 ath:AT5G66520 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF26485DUF815628-88 aaPF13424TPR_1236-68 aaPF23914TPR_CcmH_CycH47-117 aaPF14852Fis1_TPR_N51-80 aaPF14559TPR_1951-78 aaPF13428TPR_1467-81 aaPF25062ARM_TT21_N70-140 aaPF14559TPR_1971-132 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G350460 | PF26485 | DUF8156 | 28 | 88 | 0.24 | 12.5 |
| TkA05G350460 | PF13424 | TPR_12 | 36 | 68 | 0.0016 | 19.3 |
| TkA05G350460 | PF23914 | TPR_CcmH_CycH | 47 | 117 | 0.044 | 14.3 |
| TkA05G350460 | PF14852 | Fis1_TPR_N | 51 | 80 | 4.7e-11 | 42.9 |
| TkA05G350460 | PF14559 | TPR_19 | 51 | 78 | 0.019 | 16.0 |
| TkA05G350460 | PF13428 | TPR_14 | 67 | 81 | 0.013 | 16.8 |
| TkA05G350460 | PF25062 | ARM_TT21_N | 70 | 140 | 0.0028 | 18.1 |
| TkA05G350460 | PF14559 | TPR_19 | 71 | 132 | 0.019 | 16.0 |
| TkA05G350460 | PF27626 | CNOT10_TPR | 83 | 129 | 0.09 | 13.2 |
| TkA05G350460 | PF14853 | Fis1_TPR_C | 90 | 142 | 2e-22 | 79.8 |
| TkA05G350460 | PF13830 | DUF4192 | 91 | 136 | 0.16 | 12.6 |
| TkA05G350460 | PF25060 | ARM_TT21_2nd | 91 | 122 | 0.24 | 11.6 |
| TkA05G350460 | PF07719 | TPR_2 | 93 | 122 | 0.00043 | 20.9 |
| TkA05G350460 | PF13424 | TPR_12 | 93 | 120 | 0.0016 | 19.3 |
| TkA05G350460 | PF13428 | TPR_14 | 94 | 127 | 0.013 | 16.8 |
| TkA05G350460 | PF26485 | DUF8156 | 108 | 131 | 0.24 | 12.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.