TkA05G349470 | RubberDandelionOmics

Gene overview

TkA05G349470

Reference: TK1151 Chr: Chr05 Coordinates: 86559795-86561823 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

771 bp · TkA05G349470|TK1151|cDNA

ATGGTGAAGATGATTCTGACCAATCCGATGGTGGTGGAGACGTTTGCTGAGTACCCCCCACTTGGAAGGTTCGCGGTGAGGGACATGCATCAGACTGTTGCTGTTGGTGTGATCAAGAGCATGGACAATATAGATCCAGAACCCTACTTTTCTTTAGTGATTCAGTTGATTCGTTGTGCAGCGGATTGCGAGCAACTCTACGGCCAATTTGTCAACCGATATAAATTCAACGATGTGATGATGAAGCAAAACGTGTGGCA...

CDS

Download CDS FASTA

771 bp · TkA05G349470|TK1151|CDS

ATGGTGAAGATGATTCTGACCAATCCGATGGTGGTGGAGACGTTTGCTGAGTACCCCCCACTTGGAAGGTTCGCGGTGAGGGACATGCATCAGACTGTTGCTGTTGGTGTGATCAAGAGCATGGACAATATAGATCCAGAACCCTACTTTTCTTTAGTGATTCAGTTGATTCGTTGTGCAGCGGATTGCGAGCAACTCTACGGCCAATTTGTCAACCGATATAAATTCAACGATGTGATGATGAAGCAAAACGTGTGGCA...

Protein

Download Protein FASTA

256 aa · TkA05G349470|TK1151|PROTEIN

MVKMILTNPMVVETFAEYPPLGRFAVRDMHQTVAVGVIKSMDNIDPEPYFSLVIQLIRCAADCEQLYGQFVNRYKFNDVMMKQNVWQHMRYVIMKWSGHDKFHNRKEVMAVMTVEKAMSIESLKTPATATRTVLGEPGSGGSSTLSVVGAVKKWEKSDPEKSTETWNKLSDANCELEKQLNLLSKLAEENWDSYKTVVDSCSVLKSQKWEGQFSKTWDVEIVKALLGARDAMLKIRSHMRQMGEAAGIPCLTVAYS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G349470`
TK1151 ID	TkA05G349470
OH-1004 ID	LXL04_036403
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.200
Protein coverage (%)	TK1151 66.797 / OH-1004 59.425 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G349470

Location Chr05:86559795-86561823 (-)

Description Similar to PMK: Phosphomevalonate kinase, peroxisomal

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31910`	Phosphomevalonate kinase, peroxisomal.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036403 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010142 farnesyl diphosphate biosynthetic process, mevalonate pathway Biological Process

GO:0016126 sterol biosynthetic process Biological Process

GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0004631 phosphomevalonate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G31910

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.473

Rank 1 · TkA05G349470 · TK1151

Nucleus0.402

Rank 2 · TkA05G349470 · TK1151

Mitochondrion0.122

Rank 3 · TkA05G349470 · TK1151

Cell membrane0.103

Rank 4 · TkA05G349470 · TK1151

Endoplasmic reticulum0.062

Rank 5 · TkA05G349470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22594GTP-eEF1A_C1-39 aa

PF03143GTP_EFTU_D32-40 aa

PF25227DUF784529-112 aa

PF22594GTP-eEF1A_C107-124 aa

PF03143GTP_EFTU_D3108-121 aa

PF25227DUF7845165-180 aa

PF25795TPR_XPO7173-234 aa

PF03143GTP_EFTU_D3214-228 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G349470	`PF22594`	GTP-eEF1A_C	1	39	5.8e-12	46.6
TkA05G349470	`PF03143`	GTP_EFTU_D3	2	40	8.3e-07	30.0
TkA05G349470	`PF25227`	DUF7845	29	112	0.1	12.7
TkA05G349470	`PF22594`	GTP-eEF1A_C	107	124	5.8e-12	46.6
TkA05G349470	`PF03143`	GTP_EFTU_D3	108	121	8.3e-07	30.0
TkA05G349470	`PF25227`	DUF7845	165	180	0.1	12.7
TkA05G349470	`PF25795`	TPR_XPO7	173	234	0.064	13.2
TkA05G349470	`PF03143`	GTP_EFTU_D3	214	228	8.3e-07	30.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C6T1`	Arabidopsis thaliana	sp\|Q9C6T1\|PMK_ARATH Phosphomevalonate kinase, peroxisomal	62.900%	Swiss-Prot	Low

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