RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G340930
Reference: TK1151 Chr: Chr05 Coordinates: 84455659-84457527 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1293 bp · TkA05G340930|TK1151|cDNA

TTCAGAGAAGATTCTTTTCTACTCTCTCTCCATCAATCAAAACTTTGCATGGTTTTCCCCTCTCTCTTCCTGCCATTAAATTGGGATTTGTAAGTGTGGGCTCTCTGTACTAAAATAAACTTTTCATGACTCTTAAAAATCTCATCACCACCTTCTTTAGGCACAAGCACTTGTTCAACGATTGAATTCCCCTCACCCCTTTCCACTTCACGTCAAGAGCACAAGTGAAAGATTTAACCCAATTCTTGTTGATAAGCTAT...

CDS

Download CDS FASTA

837 bp · TkA05G340930|TK1151|CDS

ATGGAAGATGAAATGGTGTTTCAAGATTCCAACATCACATCTTTCCTGAATCCTTCTTCTCAAGTTCTTGATTCTCTATGGATTCCCGCTTCTTCATCCACCTCTTTTCATGGAGAAACCAACACATCACCGACAATGAATCCGGCAACCGGCGGCGAAAACCTCGACGAAAACTGCTACAGTCAACCGGAGAAGAAACGGCGGCTCATGGCGGAGCAAGTGCTGTTTCTCGAGAAGAGTTTCGAAATTGAGAACAAACT...

Protein

Download Protein FASTA

278 aa · TkA05G340930|TK1151|PROTEIN

MEDEMVFQDSNITSFLNPSSQVLDSLWIPASSSTSFHGETNTSPTMNPATGGENLDENCYSQPEKKRRLMAEQVLFLEKSFEIENKLEPERKIQLAKELNLQPRQVAIWFQNRRARYKTKQLEKDYDFLKSNYDKLKLDFDRLQKDNDKLKIEVQFLQEKLVERGKAKQDTLACAIPTMELESNAGKPKPFPVLTQNGTNVVICKIEDANSVSAKSDIVDSNSPHQDSCHLLENQSDEDDNLSGNVLRFPKSEYESYFEM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA05G340930
TK1151 IDTkA05G340930
OH-1004 IDLXL04_025214
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)54.300
Protein coverage (%)TK1151 99.640 / OH-1004 98.947
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G340930
LocationChr05:84455659-84457527 (+)
DescriptionSimilar to HAT5: Homeobox-leucine zipper protein HAT5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g01470 Probable transcription activator involved in leaf development.
Ectopic expression of the Arabidopsis transcriptional activator Athb-1 alters leaf cell fate in tobacco.1995 · DOI: 10.1105/tpc.7.11.1773
At5g65310 Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. No verified direct reference in this release
At1g69780 Probable transcription factor that may act in the sucrose-signaling pathway. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0729700 Probable transcription factor. No verified direct reference in this release
UniProt: A2X980 Probable transcription factor. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025214 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009637 response to blue light Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0017148 negative regulation of translation Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function
KEGG gene cross-reference
ath:AT2G22430
ath:AT3G01470
dosa:Os02g0729700
dosa:Os09g0470500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.977
Rank 1 · TkA05G340930 · TK1151
Cytoplasm0.093
Rank 2 · TkA05G340930 · TK1151
Cell membrane0.020
Rank 3 · TkA05G340930 · TK1151
Endoplasmic reticulum0.011
Rank 4 · TkA05G340930 · TK1151
Plastid0.009
Rank 5 · TkA05G340930 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30528PIBF155-170 aa
PF05920Homeobox_KN58-72 aa
PF00046Homeodomain65-118 aa
PF25450Rab11-FIP366-94 aa
PF10224DUF220566-81 aa
PF12709Fungal_TACC74-83 aa
PF03920TLE_N74-98 aa
PF24655DUF764584-121 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G340930PF30528PIBF1551700.01114.9
TkA05G340930PF05920Homeobox_KN58725.6e-0523.6
TkA05G340930PF00046Homeodomain651188.4e-1658.3
TkA05G340930PF25450Rab11-FIP366940.2612.3
TkA05G340930PF10224DUF220566810.8610.4
TkA05G340930PF12709Fungal_TACC74830.03615.3
TkA05G340930PF03920TLE_N74980.9410.6
TkA05G340930PF24655DUF7645841210.03614.7
TkA05G340930PF05920Homeobox_KN891165.6e-0523.6
TkA05G340930PF08172CASP_C1111590.02714.5
TkA05G340930PF29075NOCA1_mid1121620.07113.7
TkA05G340930PF25450Rab11-FIP31141640.2612.3
TkA05G340930PF10224DUF22051161590.8610.4
TkA05G340930PF29599Rv0250c1171770.05614.1
TkA05G340930PF06156YabA1181690.01117.1
TkA05G340930PF02183HALZ1201615.2e-1659.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q02283Arabidopsis thalianasp|Q02283|HAT5_ARATH Homeobox-leucine zipper protein HAT574.300%Swiss-ProtLow
P46667Arabidopsis thalianasp|P46667|ATHB5_ARATH Homeobox-leucine zipper protein ATHB-579.700%Swiss-ProtLow
Q8LC03Arabidopsis thalianasp|Q8LC03|ATB13_ARATH Homeobox-leucine zipper protein ATHB-1366.300%Swiss-ProtLow
Q6YWR4Oryza sativa subsp. japonicasp|Q6YWR4|HOX16_ORYSJ Homeobox-leucine zipper protein HOX1660.500%Swiss-ProtLow
A2X980Oryza sativa subsp. indicasp|A2X980|HOX16_ORYSI Homeobox-leucine zipper protein HOX1660.500%Swiss-ProtLow

JBrowse

View in Genome Browser