TkA05G307530 | RubberDandelionOmics

Gene overview

TkA05G307530

Reference: TK1151 Chr: Chr05 Coordinates: 75912027-75913090 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

860 bp · TkA05G307530|TK1151|cDNA

TAGGTGCACCAAGAATGGCCGCAGCAGCAGCTCAGTGTCTCTACCTCTCCTCTAGGTTTCAATCCCTCTCTCTTTCTTCTTCTTCCCGACCGTCTGCCACCACATTCAAGCCTCTCAGCTGCTCCGCCAACGTTTCATTCAACGCCTTCTCCACTGGGTTAGTGTACGTAAACCCTATACTCAGGAGGCAAGCCGGTAGGTCTATTACAATCGTTTGCGAAGCCGGTGCCGGGCAGAAGGCCGATTCGGCGGCGAAGAGG...

CDS

Download CDS FASTA

555 bp · TkA05G307530|TK1151|CDS

ATGGCCGCAGCAGCAGCTCAGTGTCTCTACCTCTCCTCTAGGTTTCAATCCCTCTCTCTTTCTTCTTCTTCCCGACCGTCTGCCACCACATTCAAGCCTCTCAGCTGCTCCGCCAACGTTTCATTCAACGCCTTCTCCACTGGGTTAGTGTACGTAAACCCTATACTCAGGAGGCAAGCCGGTAGGTCTATTACAATCGTTTGCGAAGCCGGTGCCGGGCAGAAGGCCGATTCGGCGGCGAAGAGGGCTCGCCAGGCGGA...

Protein

Download Protein FASTA

184 aa · TkA05G307530|TK1151|PROTEIN

MAAAAAQCLYLSSRFQSLSLSSSSRPSATTFKPLSCSANVSFNAFSTGLVYVNPILRRQAGRSITIVCEAGAGQKADSAAKRARQAEKRRLCNKSRKSEIRTRMKKVLEELDLLRKKTDAQQEEVIGVEKLIAEAYSVIDKAVQVGTLHRNTGARRKSRLARRKKAVEIHHGWYAPEPSPASTV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G307530`
TK1151 ID	TkA05G307530
OH-1004 ID	LXL04_001957
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	96.700
Protein coverage (%)	TK1151 100.000 / OH-1004 87.204 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G307530

Location Chr05:75912027-75913090 (+)

Description Similar to RPS20: 30S ribosomal protein S20, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g15190`	Binds directly to 16S ribosomal RNA.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001957 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0015935 small ribosomal subunit Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

GO:0070181 small ribosomal subunit rRNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G15190

cyp:PCC8801_1753

cyt:cce_3490

tel:tsl1188

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.973

Rank 1 · TkA05G307530 · TK1151

Mitochondrion0.037

Rank 2 · TkA05G307530 · TK1151

Nucleus0.020

Rank 3 · TkA05G307530 · TK1151

Cytoplasm0.012

Rank 4 · TkA05G307530 · TK1151

Cell membrane0.006

Rank 5 · TkA05G307530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01649Ribosomal_S20p77-163 aa

PF10925DUF2680118-161 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G307530	`PF01649`	Ribosomal_S20p	77	163	4.1e-21	76.1
TkA05G307530	`PF10925`	DUF2680	118	161	0.14	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ASV6`	Arabidopsis thaliana	sp\|Q9ASV6\|RR20_ARATH Small ribosomal subunit protein bS20c	60.300%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card