TkA05G298970 | RubberDandelionOmics

Gene overview

TkA05G298970

Reference: TK1151 Chr: Chr05 Coordinates: 73728897-73729646 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

666 bp · TkA05G298970|TK1151|cDNA

ATGAAAGAAGCAATCAACCCACCAAAATCAACAACAACCAAAGCTTTCTTTCTCTCTTTGACTCTCCTCTCTCTCTTCTACCTCATCTCTCCTCTCTCTACAGTCCAAAAACCCCAACTCCGGCACGACCGTACCACCATTGTCAACGACCTCAAAATCCGACCCGGATACACATCCTACGACGCCTACATCCACCACCAGCTTCACAAAACCACCAACCCAAAGCTCCGAAATATATGGACCTCCAGAGATTGGGACAG...

CDS

Download CDS FASTA

666 bp · TkA05G298970|TK1151|CDS

ATGAAAGAAGCAATCAACCCACCAAAATCAACAACAACCAAAGCTTTCTTTCTCTCTTTGACTCTCCTCTCTCTCTTCTACCTCATCTCTCCTCTCTCTACAGTCCAAAAACCCCAACTCCGGCACGACCGTACCACCATTGTCAACGACCTCAAAATCCGACCCGGATACACATCCTACGACGCCTACATCCACCACCAGCTTCACAAAACCACCAACCCAAAGCTCCGAAATATATGGACCTCCAGAGATTGGGACAG...

Protein

Download Protein FASTA

221 aa · TkA05G298970|TK1151|PROTEIN

MKEAINPPKSTTTKAFFLSLTLLSLFYLISPLSTVQKPQLRHDRTTIVNDLKIRPGYTSYDAYIHHQLHKTTNPKLRNIWTSRDWDRKIRVFAQFFSQLKQEQLLSNSSKALCVGARVGQEVEALKRVGVNDSIGMDLVPYPPIVIKGDFHHQPFDDKTFDFEFSNVFDHALYPDKFVGEIERTLKPGGICVLHVAISRRKVDGFGLDTEVVFRKRKGSLI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G298970`
TK1151 ID	TkA05G298970
OH-1004 ID	LXL04_011648
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	64.900
Protein coverage (%)	TK1151 94.118 / OH-1004 94.821 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA05G298970`
Location	Chr05:73728897-73729646 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_011648` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.486

Rank 1 · TkA05G298970 · TK1151

Endoplasmic reticulum0.185

Rank 2 · TkA05G298970 · TK1151

Extracellular0.099

Rank 3 · TkA05G298970 · TK1151

Lysosome / Vacuole0.065

Rank 4 · TkA05G298970 · TK1151

Cytoplasm0.056

Rank 5 · TkA05G298970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13649Methyltransf_2558-77 aa

PF13489Methyltransf_23105-196 aa

PF08241Methyltransf_11112-193 aa

PF13649Methyltransf_25112-139 aa

PF05148Methyltransf_8113-196 aa

PF13649Methyltransf_25145-189 aa

PF13847Methyltransf_31146-193 aa

PF20922Anamorsin_N154-199 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G298970	`PF13649`	Methyltransf_25	58	77	8.8e-05	23.8
TkA05G298970	`PF13489`	Methyltransf_23	105	196	0.00017	22.0
TkA05G298970	`PF08241`	Methyltransf_11	112	193	4.8e-11	43.9
TkA05G298970	`PF13649`	Methyltransf_25	112	139	8.8e-05	23.8
TkA05G298970	`PF05148`	Methyltransf_8	113	196	0.016	15.8
TkA05G298970	`PF13649`	Methyltransf_25	145	189	8.8e-05	23.8
TkA05G298970	`PF13847`	Methyltransf_31	146	193	0.00016	22.1
TkA05G298970	`PF20922`	Anamorsin_N	154	199	0.29	11.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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