TkA05G118180 | RubberDandelionOmics

Gene overview

TkA05G118180

Reference: TK1151 Chr: Chr05 Coordinates: 31425729-31426115 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

387 bp · TkA05G118180|TK1151|cDNA

ATGGATGGGGTTATAAGAATGGGAAGTATGGTCTTTATAGTCACCATGATGACTAGTACATTGTCTTCTCTAGAATCCATAGACAACAAGGAGCTTATCACAAACATGATTGCTTTAGTTGTTGTAGTAATCACCTTGATATGCAATATTTGCATTCAAATAAATACAAGAAGTATCTTCAATGATGCTGATGAGTCTGAGCACCTTAGTTCTGATATTGGGTTCCTTGGTATACTTATTATTGTATTATTTTTCGTGGT...

CDS

Download CDS FASTA

387 bp · TkA05G118180|TK1151|CDS

ATGGATGGGGTTATAAGAATGGGAAGTATGGTCTTTATAGTCACCATGATGACTAGTACATTGTCTTCTCTAGAATCCATAGACAACAAGGAGCTTATCACAAACATGATTGCTTTAGTTGTTGTAGTAATCACCTTGATATGCAATATTTGCATTCAAATAAATACAAGAAGTATCTTCAATGATGCTGATGAGTCTGAGCACCTTAGTTCTGATATTGGGTTCCTTGGTATACTTATTATTGTATTATTTTTCGTGGT...

Protein

Download Protein FASTA

128 aa · TkA05G118180|TK1151|PROTEIN

MDGVIRMGSMVFIVTMMTSTLSSLESIDNKELITNMIALVVVVITLICNICIQINTRSIFNDADESEHLSSDIGFLGILIIVLFFVVSHTRVAVNISMFISCNSKIQIDSRTEIPSISSKMLKGTRVA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G118180`
TK1151 ID	TkA05G118180
OH-1004 ID	LXL04_020030
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	88.200
Protein coverage (%)	TK1151 99.219 / OH-1004 72.159 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA05G118180`
Location	Chr05:31425729-31426115 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_020030` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.371

Rank 1 · TkA05G118180 · TK1151

Nucleus0.192

Rank 2 · TkA05G118180 · TK1151

Lysosome / Vacuole0.172

Rank 3 · TkA05G118180 · TK1151

Cytoplasm0.171

Rank 4 · TkA05G118180 · TK1151

Golgi apparatus0.158

Rank 5 · TkA05G118180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16212PhoLip_ATPase_C3-88 aa

PF00324AA_permease9-87 aa

PF05656DUF80511-87 aa

PF252215TMH_Lnb11-18 aa

PF09586YfhO14-118 aa

PF04061ORMDL18-45 aa

PF06687SUR718-109 aa

PF252215TMH_Lnb30-101 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G118180	`PF16212`	PhoLip_ATPase_C	3	88	0.21	12.0
TkA05G118180	`PF00324`	AA_permease	9	87	0.22	10.9
TkA05G118180	`PF05656`	DUF805	11	87	0.38	11.9
TkA05G118180	`PF25221`	5TMH_Lnb	11	18	0.43	11.3
TkA05G118180	`PF09586`	YfhO	14	118	0.3	10.0
TkA05G118180	`PF04061`	ORMDL	18	45	0.1	13.2
TkA05G118180	`PF06687`	SUR7	18	109	0.13	12.6
TkA05G118180	`PF25221`	5TMH_Lnb	30	101	0.43	11.3
TkA05G118180	`PF20485`	DUF6724	39	67	9.2	6.9
TkA05G118180	`PF04061`	ORMDL	58	101	0.1	13.2
TkA05G118180	`PF20485`	DUF6724	73	88	9.2	6.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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