TkA05G111760 | RubberDandelionOmics

Gene overview

TkA05G111760

Reference: TK1151 Chr: Chr05 Coordinates: 29949479-29949919 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

441 bp · TkA05G111760|TK1151|cDNA

ATGAATTTACTTTCTTCCTCCGAATCAATAAAGAAAACGATCAGCGAGTGTGAGGAAAAGGCAACAGAAGGTGAGAAGAGATACTGTGCTACTTCATTAGAGGCCATGGTAGATTTTAGCTCATCCGAATTGGGGAAAAACGTTAAGGTGGTGTCAACGGAGGTAAATTCAGGGAAAATGCAAAAGTATACCATCAAAGGAGCGACGAAATTGACTGGTACTAATCAAGCAGTGGTGAAATTCCTGGAAGGTCTTGGTGA...

CDS

Download CDS FASTA

441 bp · TkA05G111760|TK1151|CDS

ATGAATTTACTTTCTTCCTCCGAATCAATAAAGAAAACGATCAGCGAGTGTGAGGAAAAGGCAACAGAAGGTGAGAAGAGATACTGTGCTACTTCATTAGAGGCCATGGTAGATTTTAGCTCATCCGAATTGGGGAAAAACGTTAAGGTGGTGTCAACGGAGGTAAATTCAGGGAAAATGCAAAAGTATACCATCAAAGGAGCGACGAAATTGACTGGTACTAATCAAGCAGTGGTGAAATTCCTGGAAGGTCTTGGTGA...

Protein

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146 aa · TkA05G111760|TK1151|PROTEIN

MNLLSSSESIKKTISECEEKATEGEKRYCATSLEAMVDFSSSELGKNVKVVSTEVNSGKMQKYTIKGATKLTGTNQAVVKFLEGLGDRVIFSSIFFPRAIISIHDSYPTSSNKNVPKFLILSNSIHPTTRRFLFTATVKIIIACQI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G111760`
TK1151 ID	TkA05G111760
OH-1004 ID	LXL04_005680
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	84.900
Protein coverage (%)	TK1151 50.000 / OH-1004 19.891 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G111760

Location Chr05:29949479-29949919 (+)

Description Similar to RD22: BURP domain protein RD22

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g25610`	Acts to suppress chlorophyll degradation under moisture stress.	AtRD22 and AtUSPL1, members of the plant-specific BURP domain family involved in Arabidopsis thaliana drought tolerance.2014 · DOI: 10.1371/journal.pone.0110065

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005680 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010152 pollen maturation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0043668 exine Cellular Component

GO:0070645 Ubisch body Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT5G25610

dosa:Os04g0225700

dosa:Os11g0170900

osa:4335212

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.314

Rank 1 · TkA05G111760 · TK1151

Mitochondrion0.313

Rank 2 · TkA05G111760 · TK1151

Nucleus0.201

Rank 3 · TkA05G111760 · TK1151

Plastid0.125

Rank 4 · TkA05G111760 · TK1151

Cell membrane0.071

Rank 5 · TkA05G111760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03181BURP7-77 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G111760	`PF03181`	BURP	7	77	6.7e-18	65.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q08298`	Arabidopsis thaliana	sp\|Q08298\|RD22_ARATH BURP domain protein RD22	59.400%	Swiss-Prot	Low

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