Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1086 bp · TkA05G095340|TK1151|cDNA
ATGCATTCATTCTCTTACGAATGTATGTTTGTCATTCTTTTACGAATGGATATCCGCTCCATGTCATATGGAATGGATGATGATTTTGATGGAAATGAAGGTGATAATGATGATGAAAATATATTGGATGAAAATACATTTGAGCATGGTCAGAGTTGTAATGTGGAAGAAGGTGATGAACCAACGGAGGCTGAAATTTTTGGGTTAAACGATGCCTACCATATACCTGATGTAAATTTAGAGTTTAAACTAGTAAACGG...
1086 bp · TkA05G095340|TK1151|CDS
ATGCATTCATTCTCTTACGAATGTATGTTTGTCATTCTTTTACGAATGGATATCCGCTCCATGTCATATGGAATGGATGATGATTTTGATGGAAATGAAGGTGATAATGATGATGAAAATATATTGGATGAAAATACATTTGAGCATGGTCAGAGTTGTAATGTGGAAGAAGGTGATGAACCAACGGAGGCTGAAATTTTTGGGTTAAACGATGCCTACCATATACCTGATGTAAATTTAGAGTTTAAACTAGTAAACGG...
Protein
Download Protein FASTA361 aa · TkA05G095340|TK1151|PROTEIN
MHSFSYECMFVILLRMDIRSMSYGMDDDFDGNEGDNDDENILDENTFEHGQSCNVEEGDEPTEAEIFGLNDAYHIPDVNLEFKLVNGMQFDSLEAAGKMYRKYAYEAGFDVRQDAQMLLNKMTNRKEHVPNFSFVIKDDNGRLDDIFWADETAKFQYNVFGDVVSVDATYATNRYNMVFVPFTGLNNHRKCVTFGAGLISREDYPSFLWKKSVSTIDPTTIDEDVMDDAYSFDSITNDKEFKVTYQTQDRTFHCTCMNFE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G095340 |
|---|---|
| TK1151 ID | TkA05G095340 |
| OH-1004 ID | LXL04_007412 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 36.300 |
| Protein coverage (%) | TK1151 86.150 / OH-1004 90.895Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G095340 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:25723145-25726473 (-) | |||||||||
| Description | Similar to FRS5: Protein FAR1-RELATED SEQUENCE 5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0007623 circadian rhythm Biological Process GO:0009585 red, far-red light phototransduction Biological Process GO:0009639 response to red or far red light Biological Process GO:0010017 red or far-red light signaling pathway Biological Process GO:0010018 far-red light signaling pathway Biological Process GO:0010218 response to far red light Biological Process GO:0042753 positive regulation of circadian rhythm Biological Process GO:0045893 positive regulation of DNA-templated transcription Biological Process GO:1900056 negative regulation of leaf senescence Biological Process GO:0005634 nucleus Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G52520 ath:AT1G80010 ath:AT3G22170 ath:AT4G15090 ath:AT4G38180 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF21056ZSWIM1-3_RNaseH-like127-182 aaPF10551MULE163-209 aaPF04434SWIM254-269 aaPF09514SSXRD335-348 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G095340 | PF21056 | ZSWIM1-3_RNaseH-like | 127 | 182 | 0.0013 | 19.4 |
| TkA05G095340 | PF10551 | MULE | 163 | 209 | 3.9e-09 | 37.5 |
| TkA05G095340 | PF04434 | SWIM | 254 | 269 | 0.095 | 13.0 |
| TkA05G095340 | PF09514 | SSXRD | 335 | 348 | 0.36 | 11.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.