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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G083130
Reference: TK1151 Chr: Chr05 Coordinates: 22514942-22519577 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1194 bp · TkA05G083130|TK1151|cDNA

ATGTCATTTTCTCCCTTTGTTGGGGTGAACCATCATGGTCAATCCATACTTTTTGGTGGTGCATTATTAGAAAATGAAACAGAAGAAACTTTCCAATGGCTATTTGAGCAATTTTTAAAGTGTATGTTTAACAAGCACCCAAGCGCCATTATAACGGATCAAGATAAAGCTATAGGTAATGCAATCAAAAAGGTGTTTCCTAACACTCGACATCGCTATTGTGCATGGCATATAAAGAAACATGAGCTTCAACATCTTGG...

CDS

Download CDS FASTA

1194 bp · TkA05G083130|TK1151|CDS

ATGTCATTTTCTCCCTTTGTTGGGGTGAACCATCATGGTCAATCCATACTTTTTGGTGGTGCATTATTAGAAAATGAAACAGAAGAAACTTTCCAATGGCTATTTGAGCAATTTTTAAAGTGTATGTTTAACAAGCACCCAAGCGCCATTATAACGGATCAAGATAAAGCTATAGGTAATGCAATCAAAAAGGTGTTTCCTAACACTCGACATCGCTATTGTGCATGGCATATAAAGAAACATGAGCTTCAACATCTTGG...

Protein

Download Protein FASTA

397 aa · TkA05G083130|TK1151|PROTEIN

MSFSPFVGVNHHGQSILFGGALLENETEETFQWLFEQFLKCMFNKHPSAIITDQDKAIGNAIKKVFPNTRHRYCAWHIKKHELQHLGSLATHYSDFKESYKKWVKSDTTEEFEREWEVMTMLNEFVVQYDKAVDSRRAVEEDEDFKTMNSKAILSSVHPIEAKAEWIEATQNLTHETLSKSNEEIKYRVGQVNVDKAHWRFVIYRMTNQVDVKCSCAKFQTYGILCKHSLYVMKKSSVQTLPDHYILPRWTLDARFRVGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G083130
TK1151 IDTkA05G083130
OH-1004 IDLXL04_007736
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)87.100
Protein coverage (%)TK1151 85.642 / OH-1004 63.286
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G083130
LocationChr05:22514942-22519577 (+)
DescriptionSimilar to FRS7: Protein FAR1-RELATED SEQUENCE 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g27110 Putative transcription activator involved in regulating light control of development. No verified direct reference in this release
At1g80010 Putative transcription activator involved in regulating light control of development.
Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.2004 · DOI: 10.1104/pp.104.052191
At4g38170 Putative transcription activator involved in regulating light control of development.
Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.2004 · DOI: 10.1104/pp.104.052191

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007736 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0005634 nucleus Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G27110
ath:AT3G06250
ath:AT4G38170
ath:AT4G38180
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.891
Rank 1 · TkA05G083130 · TK1151
Cytoplasm0.173
Rank 2 · TkA05G083130 · TK1151
Mitochondrion0.027
Rank 3 · TkA05G083130 · TK1151
Cell membrane0.021
Rank 4 · TkA05G083130 · TK1151
Endoplasmic reticulum0.012
Rank 5 · TkA05G083130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10551MULE2-80 aa
PF00872Transposase_mut7-137 aa
PF13610DDE_Tnp_IS2409-84 aa
PF21056ZSWIM1-3_RNaseH-like12-70 aa
PF21056ZSWIM1-3_RNaseH-like88-105 aa
PF14807AP4E_app_platf108-176 aa
PF21056ZSWIM1-3_RNaseH-like113-148 aa
PF16157DUF4865139-225 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G083130PF10551MULE2805.7e-2691.5
TkA05G083130PF00872Transposase_mut71372.3e-0524.2
TkA05G083130PF13610DDE_Tnp_IS2409840.02915.2
TkA05G083130PF21056ZSWIM1-3_RNaseH-like12700.002118.7
TkA05G083130PF21056ZSWIM1-3_RNaseH-like881050.002118.7
TkA05G083130PF14807AP4E_app_platf1081760.002618.7
TkA05G083130PF21056ZSWIM1-3_RNaseH-like1131480.002118.7
TkA05G083130PF16157DUF48651392250.03115.0
TkA05G083130PF10551MULE1421575.7e-2691.5
TkA05G083130PF04434SWIM1932324.3e-0523.7
TkA05G083130PF16157DUF48652642990.03115.0
TkA05G083130PF04434SWIM3753824.3e-0523.7
TkA05G083130PF00098zf-CCHC3783940.3811.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZVC9Arabidopsis thalianasp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 327.400%Swiss-ProtLow
Q9S793Arabidopsis thalianasp|Q9S793|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 839.700%Swiss-ProtLow
Q9SZL7Arabidopsis thalianasp|Q9SZL7|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 926.600%Swiss-ProtLow

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