TkA05G081050 | RubberDandelionOmics

Gene overview

TkA05G081050

Reference: TK1151 Chr: Chr05 Coordinates: 21450451-21450765 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

315 bp · TkA05G081050|TK1151|cDNA

ATGGGGATCAAGAAATCAAATAAACTGTCACAAGCAGCACTCTTAAAGCAAATCCTCAAACGATGTTCTAGTTTAGGCAAAAAACATGGATACGACGACGACGGTCTCCCTCTGGACGTCCCGAAAGGCCATTTCCCGGTTTACGTCGGAGTTAATCGCACAAGATACATCGTTCCTATTTCTTTCTTGACACACCCTGAATTCCAACGTCTGCTTCGCTACGCCGAGGAGGAATTCGGATTTCATCACGAAATGGGCCT...

CDS

Download CDS FASTA

315 bp · TkA05G081050|TK1151|CDS

ATGGGGATCAAGAAATCAAATAAACTGTCACAAGCAGCACTCTTAAAGCAAATCCTCAAACGATGTTCTAGTTTAGGCAAAAAACATGGATACGACGACGACGGTCTCCCTCTGGACGTCCCGAAAGGCCATTTCCCGGTTTACGTCGGAGTTAATCGCACAAGATACATCGTTCCTATTTCTTTCTTGACACACCCTGAATTCCAACGTCTGCTTCGCTACGCCGAGGAGGAATTCGGATTTCATCACGAAATGGGCCT...

Protein

Download Protein FASTA

104 aa · TkA05G081050|TK1151|PROTEIN

MGIKKSNKLSQAALLKQILKRCSSLGKKHGYDDDGLPLDVPKGHFPVYVGVNRTRYIVPISFLTHPEFQRLLRYAEEEFGFHHEMGLTIPCEEVVFRSLTSMLR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G081050`
TK1151 ID	TkA05G081050
OH-1004 ID	LXL04_009822
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	84.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G081050

Location Chr05:21450451-21450765 (+)

Description Similar to SAUR50: Auxin-responsive protein SAUR50

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g21220`	Provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), and triggers PM H(+)-ATPases activity by promoting phosphorylation of their C-terminal autoinhibitory domain as a result of PP2C-D subfamily of type 2C phosphatases inhibition, thus leading to the acidification of the apoplast and the facilitation of solutes and water uptake to drive cell expansion (By similarity).	No verified direct reference in this release
`At4g38860`	Provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), and triggers PM H(+)-ATPases activity by promoting phosphorylation of their C-terminal autoinhibitory domain as a result of PP2C-D subfamily of type 2C phosphatases inhibition, thus leading to the acidification of the apoplast and the facilitation of solutes and water uptake to drive cell expansion (By similarity).	Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade.2017 · DOI: 10.1186/s12870-017-1210-4
`At4g34760`	Provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), and triggers PM H(+)-ATPases activity by promoting phosphorylation of their C-terminal autoinhibitory domain as a result of PP2C-D subfamily of type 2C phosphatases inhibition, thus leading to the acidification of the apoplast and the facilitation of solutes and water uptake to drive cell expansion (By similarity).	No verified direct reference in this release
`At1g75580`	Provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), and triggers PM H(+)-ATPases activity by promoting phosphorylation of their C-terminal autoinhibitory domain as a result of PP2C-D subfamily of type 2C phosphatases inhibition, thus leading to the acidification of the apoplast and the facilitation of solutes and water uptake to drive cell expansion (By similarity).	No verified direct reference in this release
`At2g16580`	Provide a mechanistic link between auxin and plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), and triggers PM H(+)-ATPases activity by promoting phosphorylation of their C-terminal autoinhibitory domain as a result of PP2C-D subfamily of type 2C phosphatases inhibition, thus leading to the acidification of the apoplast and the facilitation of solutes and water uptake to drive cell expansion (By similarity).	Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade.2017 · DOI: 10.1186/s12870-017-1210-4

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_009822 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009639 response to red or far red light Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G75580

ath:AT2G16580

ath:AT2G21220

ath:AT4G34760

ath:AT4G38860

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.524

Rank 1 · TkA05G081050 · TK1151

Nucleus0.324

Rank 2 · TkA05G081050 · TK1151

Cell membrane0.249

Rank 3 · TkA05G081050 · TK1151

Endoplasmic reticulum0.075

Rank 4 · TkA05G081050 · TK1151

Plastid0.046

Rank 5 · TkA05G081050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02519Auxin_inducible19-104 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G081050	`PF02519`	Auxin_inducible	19	104	5.4e-26	91.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SIG9`	Arabidopsis thaliana	sp\|Q9SIG9\|SAU12_ARATH Protein SMALL AUXIN UP-REGULATED RNA 12	76.700%	Swiss-Prot	High
`Q9T0J3`	Arabidopsis thaliana	sp\|Q9T0J3\|SAU16_ARATH Protein SMALL AUXIN UP-REGULATED RNA 16	79.000%	Swiss-Prot	High
`O65695`	Arabidopsis thaliana	sp\|O65695\|SAU50_ARATH Auxin-responsive protein SAUR50	77.900%	Swiss-Prot	High
`Q9LR00`	Arabidopsis thaliana	sp\|Q9LR00\|SAU51_ARATH Protein SMALL AUXIN UP-REGULATED RNA 51	75.000%	Swiss-Prot	High
`Q9SI60`	Arabidopsis thaliana	sp\|Q9SI60\|SAUR8_ARATH Protein SMALL AUXIN UP-REGULATED RNA 8	72.400%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card