TkA05G068990 | RubberDandelionOmics

Gene overview

TkA05G068990

Reference: TK1151 Chr: Chr05 Coordinates: 18448062-18453773 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2036 bp · TkA05G068990|TK1151|cDNA

ATCTCCCGAAACATACCATATATAGAGAGGAAGAGAGAAGGCATGGATATTCACACATATCATGTATGCACATAGCCGAAGGGCATACTGCGTATCAAAATTGAAGATTGCGTTCTTCAATCTTCCTTTTAAAACTTGAAACGTTATTTAATCGGATCTCGAAGGAATTTTGGGGGTTTGTTGCTTAATTTGATTTACGTGAGATAAATATATATTGATTCGGTATCAATGGTGACGGTGGATAACGAGAGTTGTGGAAG...

CDS

Download CDS FASTA

1659 bp · TkA05G068990|TK1151|CDS

ATGGTGACGGTGGATAACGAGAGTTGTGGAAGTATTAGTATGGAATCGAAGCGGCCGTCCACGGCGGTGATTAATAATAACAATAACCGGAATCAGATACAAAAGCTCGAGGTTTACAATGAGATTCTTCTGCGACTCAAAGAATCCAACAGCGGTGAAGCCAAAGAACCTGGTTTTGATGATAAGCTCTTGGCGCACTTCAATCGTCTACCGAACAGGTATGCACTTGATGTAAATGTTGAAAGGGCAGAAGATGTACT...

Protein

Download Protein FASTA

552 aa · TkA05G068990|TK1151|PROTEIN

MVTVDNESCGSISMESKRPSTAVINNNNNRNQIQKLEVYNEILLRLKESNSGEAKEPGFDDKLLAHFNRLPNRYALDVNVERAEDVLMHKRLLSLAHDSPSGPVFDVHLVQVSSSSEDLVNYSSSGKSIHPPPAFGSSPNLEVLALEGNGDNAVNSLTNFPRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGYSLDVFVVDGWPFEETEELREAIERKLSKLEKQSCSNQQDQRGKSCQIDHLRIPNDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G068990`
TK1151 ID	TkA05G068990
OH-1004 ID	LXL04_019615
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G068990

Location Chr05:18448062-18453773 (+)

Description Similar to STY46: Serine/threonine-protein kinase STY46

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38470`	Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).	A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200 The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
`At4g35780`	Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).	A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200 The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
`At2g17700`	Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).	A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200 The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
`At2g24360`	Serine/threonine protein kinase that phosphorylates proteins on serine, threonine and tyrosine residues.	Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases.2006 · DOI: 10.1007/s11103-005-4109-7
`At1g62400`	Serine/threonine/tyrosine kinase involved in the control of stomatal movement in response to CO(2).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019615 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0007165 signal transduction Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010344 seed oilbody biogenesis Biological Process

GO:0045995 regulation of embryonic development Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0071244 cellular response to carbon dioxide Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0090333 regulation of stomatal closure Biological Process

GO:2000030 regulation of response to red or far red light Biological Process

KEGG gene cross-reference

ath:AT1G62400

ath:AT2G17700

ath:AT2G24360

ath:AT4G35780

ath:AT4G38470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.551

Rank 1 · TkA05G068990 · TK1151

Cell membrane0.325

Rank 2 · TkA05G068990 · TK1151

Nucleus0.245

Rank 3 · TkA05G068990 · TK1151

Golgi apparatus0.093

Rank 4 · TkA05G068990 · TK1151

Lysosome / Vacuole0.068

Rank 5 · TkA05G068990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22754bHLH-TF_ACT-like_plant106-118 aa

PF01842ACT166-226 aa

PF13740ACT_6167-210 aa

PF22754bHLH-TF_ACT-like_plant174-228 aa

PF12330Haspin_kinase266-324 aa

PF07714PK_Tyr_Ser-Thr271-519 aa

PF00069Pkinase274-517 aa

PF03109ABC1274-315 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G068990	`PF22754`	bHLH-TF_ACT-like_plant	106	118	0.17	12.8
TkA05G068990	`PF01842`	ACT	166	226	1.4e-05	25.4
TkA05G068990	`PF13740`	ACT_6	167	210	0.12	12.9
TkA05G068990	`PF22754`	bHLH-TF_ACT-like_plant	174	228	0.17	12.8
TkA05G068990	`PF12330`	Haspin_kinase	266	324	0.0071	16.1
TkA05G068990	`PF07714`	PK_Tyr_Ser-Thr	271	519	4e-74	249.9
TkA05G068990	`PF00069`	Pkinase	274	517	1.5e-60	205.5
TkA05G068990	`PF03109`	ABC1	274	315	3.1e-06	27.2
TkA05G068990	`PF03109`	ABC1	342	415	3.1e-06	27.2
TkA05G068990	`PF17667`	Pkinase_fungal	369	452	0.00036	20.1
TkA05G068990	`PF14531`	Kinase-like	379	445	0.18	11.7
TkA05G068990	`PF12330`	Haspin_kinase	390	422	0.0071	16.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JTP5`	Arabidopsis thaliana	sp\|F4JTP5\|STY46_ARATH Serine/threonine-protein kinase STY46	65.100%	Swiss-Prot	High
`Q8RWL6`	Arabidopsis thaliana	sp\|Q8RWL6\|STY17_ARATH Serine/threonine-protein kinase STY17	60.800%	Swiss-Prot	High
`O22558`	Arabidopsis thaliana	sp\|O22558\|STY8_ARATH Serine/threonine-protein kinase STY8	60.200%	Swiss-Prot	High
`Q9ZQ31`	Arabidopsis thaliana	sp\|Q9ZQ31\|STY13_ARATH Serine/threonine-protein kinase STY13	46.300%	Swiss-Prot	Low
`Q2MHE4`	Arabidopsis thaliana	sp\|Q2MHE4\|HT1_ARATH Serine/threonine/tyrosine-protein kinase HT1	45.500%	Swiss-Prot	Low

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