TkA05G068950 | RubberDandelionOmics

Gene overview

TkA05G068950

Reference: TK1151 Chr: Chr05 Coordinates: 18433205-18442190 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

993 bp · TkA05G068950|TK1151|cDNA

ATGACTAACAAGTTCAAGTTTACTTTTGCTACATTTGTTGGGGTGAATCATCATGCGCAGTCTATACTTTTTGGTGGAGCATTGCTAGAAAACGAAAAGGAAGAAACATTTGAATGGTTATTTGAGCATTTCCTCAAATGTATGTTTAGCAAGTATCCAAATTCAATTATAACTGATCAAGACAAAGCTATAAGCAATGCAATAAAAAAAGTGTTTCCAAACTCCCGACATCGATTTTGTACATGGCATATCAAGAGGCA...

CDS

Download CDS FASTA

993 bp · TkA05G068950|TK1151|CDS

ATGACTAACAAGTTCAAGTTTACTTTTGCTACATTTGTTGGGGTGAATCATCATGCGCAGTCTATACTTTTTGGTGGAGCATTGCTAGAAAACGAAAAGGAAGAAACATTTGAATGGTTATTTGAGCATTTCCTCAAATGTATGTTTAGCAAGTATCCAAATTCAATTATAACTGATCAAGACAAAGCTATAAGCAATGCAATAAAAAAAGTGTTTCCAAACTCCCGACATCGATTTTGTACATGGCATATCAAGAGGCA...

Protein

Download Protein FASTA

330 aa · TkA05G068950|TK1151|PROTEIN

MTNKFKFTFATFVGVNHHAQSILFGGALLENEKEETFEWLFEHFLKCMFSKYPNSIITDQDKAISNAIKKVFPNSRHRFCTWHIKRHELEHLRTYVTSYIDFQESYRKWVKSDTIEEFEATWDVIRDKYKVESTSWLSDMYTQRTHWVTAFLKDIFWAGMTTSGRSESIHAFFDGFVNSRTMLNEFVIQYDKAVESRRASEEDEDFKTMNSRPVLSSVHPIEAKADESKYRVGQLNIDKKYWRIVTFRSWKQVIITCSCA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G068950`
TK1151 ID	TkA05G068950
OH-1004 ID	LXL04_010323
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.500
Protein coverage (%)	TK1151 94.545 / OH-1004 44.387 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G068950

Location Chr05:18433205-18442190 (+)

Description Similar to FRS5: Protein FAR1-RELATED SEQUENCE 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g27110`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At4g38170`	Putative transcription activator involved in regulating light control of development.	Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.2004 · DOI: 10.1104/pp.104.052191
`At1g10240`	Putative transcription activator involved in regulating light control of development.	No verified direct reference in this release
`At5g28530`	Putative protein FAR1-RELATED SEQUENCE 10.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010323 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G27110

ath:AT3G06250

ath:AT4G38180

ath:AT5G18960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.501

Rank 1 · TkA05G068950 · TK1151

Nucleus0.499

Rank 2 · TkA05G068950 · TK1151

Cell membrane0.048

Rank 3 · TkA05G068950 · TK1151

Endoplasmic reticulum0.041

Rank 4 · TkA05G068950 · TK1151

Mitochondrion0.038

Rank 5 · TkA05G068950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10551MULE2-85 aa

PF21056ZSWIM1-3_RNaseH-like2-76 aa

PF00872Transposase_mut25-147 aa

PF24529CFAP4728-85 aa

PF13610DDE_Tnp_IS24043-119 aa

PF10023Aminopep87-165 aa

PF24529CFAP47132-157 aa

PF24529CFAP47219-255 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G068950	`PF10551`	MULE	2	85	3.7e-27	95.3
TkA05G068950	`PF21056`	ZSWIM1-3_RNaseH-like	2	76	0.0011	19.6
TkA05G068950	`PF00872`	Transposase_mut	25	147	2.4e-05	24.1
TkA05G068950	`PF24529`	CFAP47	28	85	0.47	11.0
TkA05G068950	`PF13610`	DDE_Tnp_IS240	43	119	0.012	16.4
TkA05G068950	`PF10023`	Aminopep	87	165	0.0078	16.3
TkA05G068950	`PF24529`	CFAP47	132	157	0.47	11.0
TkA05G068950	`PF24529`	CFAP47	219	255	0.47	11.0
TkA05G068950	`PF04434`	SWIM	252	276	6.4e-06	26.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVC9`	Arabidopsis thaliana	sp\|Q9ZVC9\|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3	38.300%	Swiss-Prot	Medium
`Q9SZL7`	Arabidopsis thaliana	sp\|Q9SZL7\|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9	31.800%	Swiss-Prot	Medium
`Q9SY66`	Arabidopsis thaliana	sp\|Q9SY66\|FRS11_ARATH Protein FAR1-RELATED SEQUENCE 11	26.000%	Swiss-Prot	Low
`Q9LKR4`	Arabidopsis thaliana	sp\|Q9LKR4\|FRS10_ARATH Putative protein FAR1-RELATED SEQUENCE 10	22.800%	Swiss-Prot	Low

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