TkA05G048050 | RubberDandelionOmics

Gene overview

TkA05G048050

Reference: TK1151 Chr: Chr05 Coordinates: 12639241-12642249 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2441 bp · TkA05G048050|TK1151|cDNA

GATAAAATATGTTAAAAAGGTTTATACCCAAATCTATTTATTTCGTATATATTAAGTTATCACAAGATACCACCTCTATTTTGTGTCATCATATTGTTTTTATTATTATCCGTCTTACAAGTTACAATGAATGAATGAACATATTTGAAGCTTGAAAAGAAAAGGTAAAAGTAAAACACGATGAATGATACTAGGTAAGATTGCTGCTCTTGACAGTACACACTTATTTACCTCCCCTTCCCAGCAAAGCTACTACCCCT...

CDS

Download CDS FASTA

1827 bp · TkA05G048050|TK1151|CDS

ATGGCAGCTGCTCTTGAATGCTGGTCTAGCCGTACGAGCACCGATGAAGACATGGTGGAGCAAGGTCTCATGCGAACTGGAGACAGATCGGAAACTTCAGCCGCCGCAGTTGATACCTCTTCATCTTCCTCCTCCCCCTCTGCTTCCGCCGGTGGTTCTCATAAAGACAGTAACATGATGCAGAAGAAGTTTCAGAAGCTCAGTCGCAATGTCTCGGAAGCCATTGCGTCTCTCAAGAACTCCTTGAATCTCGACCCGGC...

Protein

Download Protein FASTA

608 aa · TkA05G048050|TK1151|PROTEIN

MAAALECWSSRTSTDEDMVEQGLMRTGDRSETSAAAVDTSSSSSSPSASAGGSHKDSNMMQKKFQKLSRNVSEAIASLKNSLNLDPARDLNPTRIDTSRKHVWGSVVRNLTQLYPGSQLPEKLVSNIRKHYDSLPLSYAQAGFEMKDVFLHVRLIEQASADDHPAIMIQELSDVEPQGSVFQLTFACNSSLSWPTMSGALDTLSISCKKIQIFEKKGFTLGIILLSIPINHEQEKTFKTRIETALKSALKKPSKTNSMKL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G048050`
TK1151 ID	TkA05G048050
OH-1004 ID	LXL04_019615
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	32.700
Protein coverage (%)	TK1151 45.559 / OH-1004 49.275 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G048050

Location Chr05:12639241-12642249 (-)

Description Similar to STY46: Serine/threonine-protein kinase STY46

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38470`	Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).	A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200 The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
`At2g17700`	Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).	A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200 The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
`At4g35780`	Serine/threonine protein kinase that specifically phosphorylates chloroplast precursor proteins in the cytosol within the cleavable presequences (transit peptides).	A protein kinase family in Arabidopsis phosphorylates chloroplast precursor proteins.2006 · DOI: 10.1074/jbc.m606580200 The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis.2011 · DOI: 10.1104/pp.111.182774
`At2g24360`	Serine/threonine protein kinase that phosphorylates proteins on serine, threonine and tyrosine residues.	Genome-wide analysis and experimentation of plant serine/ threonine/tyrosine-specific protein kinases.2006 · DOI: 10.1007/s11103-005-4109-7

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_019615 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0007165 signal transduction Biological Process

GO:0009658 chloroplast organization Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010344 seed oilbody biogenesis Biological Process

GO:0045995 regulation of embryonic development Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0071244 cellular response to carbon dioxide Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0090333 regulation of stomatal closure Biological Process

GO:2000030 regulation of response to red or far red light Biological Process

KEGG gene cross-reference

ath:AT1G62400

ath:AT2G17700

ath:AT2G24360

ath:AT4G35780

ath:AT4G38470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.398

Rank 1 · TkA05G048050 · TK1151

Cell membrane0.382

Rank 2 · TkA05G048050 · TK1151

Nucleus0.285

Rank 3 · TkA05G048050 · TK1151

Golgi apparatus0.076

Rank 4 · TkA05G048050 · TK1151

Endoplasmic reticulum0.065

Rank 5 · TkA05G048050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24336DUF750413-87 aa

PF24093DUF7377139-250 aa

PF00069Pkinase343-589 aa

PF07714PK_Tyr_Ser-Thr344-589 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G048050	`PF24336`	DUF7504	13	87	0.34	12.1
TkA05G048050	`PF24093`	DUF7377	139	250	1.5e-53	180.1
TkA05G048050	`PF00069`	Pkinase	343	589	1.3e-29	104.1
TkA05G048050	`PF07714`	PK_Tyr_Ser-Thr	344	589	3.2e-44	151.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JTP5`	Arabidopsis thaliana	sp\|F4JTP5\|STY46_ARATH Serine/threonine-protein kinase STY46	27.300%	Swiss-Prot	Low
`O22558`	Arabidopsis thaliana	sp\|O22558\|STY8_ARATH Serine/threonine-protein kinase STY8	32.200%	Swiss-Prot	Low
`Q8RWL6`	Arabidopsis thaliana	sp\|Q8RWL6\|STY17_ARATH Serine/threonine-protein kinase STY17	32.400%	Swiss-Prot	Low
`Q9ZQ31`	Arabidopsis thaliana	sp\|Q9ZQ31\|STY13_ARATH Serine/threonine-protein kinase STY13	30.900%	Swiss-Prot	Low

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