TkA05G045340 | RubberDandelionOmics

Gene overview

TkA05G045340

Reference: TK1151 Chr: Chr05 Coordinates: 11987574-11990354 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

830 bp · TkA05G045340|TK1151|cDNA

GAGGAAGGAAGGTGCACATATCAGCATCTTTGTCCTGCCAAATTTATAGTCTCCTTTCTTTGAACAAGTTTTGCTGCTACTTTAATACGCGCTTCGTCGGAATTCTGATCAGGGAATAATCAAATTACTCCGATCTTCGCCGGGCAACCTCAATTCTCAGAGTACGTCAACTATATCCACAATCCTAAACATCAATATGGGGATATGCTTCTCTTCGACACAAAATGATGGAGATGATTCGGATCATCATGCGGAATTTG...

CDS

Download CDS FASTA

420 bp · TkA05G045340|TK1151|CDS

ATGGGGATATGCTTCTCTTCGACACAAAATGATGGAGATGATTCGGATCATCATGCGGAATTTGTTGGAGGTAACGTGACTCTTGTCTCTACCAAGGAGGCTTGGGATCAGAAGCTCTCAGAAGCAAAGAAGGACCACAAAATAGTGATTGCTAACTTCAGTGCATCATGGTGTGGCCCATGTAGAATGATTGCACCATACTACATTGAGCTATCCGAGAAACACCCCTCTCTTATGTTTTTATCTGTGGACGTTGATGA...

Protein

Download Protein FASTA

139 aa · TkA05G045340|TK1151|PROTEIN

MGICFSSTQNDGDDSDHHAEFVGGNVTLVSTKEAWDQKLSEAKKDHKIVIANFSASWCGPCRMIAPYYIELSEKHPSLMFLSVDVDELTEFSTQWDIKATPTFFFLRDGEQFDKLVGANKPELLKKINGIVDSEPRHNA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G045340`
TK1151 ID	TkA05G045340
OH-1004 ID	LXL04_000096
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	67.900
Protein coverage (%)	TK1151 94.245 / OH-1004 93.197 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G045340

Location Chr05:11987574-11990354 (+)

Description Similar to Thioredoxin H-type

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g08710`	Probable thiol-disulfide oxidoreductase that may play a role in intercellular communication due to its ability to move from cell to cell.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0168200`	Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.	No verified direct reference in this release
`Os05g0169000`	Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.	No verified direct reference in this release
`Os05g0480200`	Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of a number of cytosolic enzymes.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000096 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007154 cell communication Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0016491 oxidoreductase activity Molecular Function

KEGG gene cross-reference

ath:AT3G08710

ath:AT3G56420

dosa:Os01g0168200

dosa:Os05g0169000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.535

Rank 1 · TkA05G045340 · TK1151

Nucleus0.254

Rank 2 · TkA05G045340 · TK1151

Endoplasmic reticulum0.166

Rank 3 · TkA05G045340 · TK1151

Cell membrane0.153

Rank 4 · TkA05G045340 · TK1151

Golgi apparatus0.152

Rank 5 · TkA05G045340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00085Thioredoxin27-127 aa

PF14595Thioredoxin_931-109 aa

PF13899Thioredoxin_734-63 aa

PF13098Thioredoxin_236-126 aa

PF00578AhpC-TSA36-89 aa

PF08534Redoxin36-76 aa

PF13905Thioredoxin_847-88 aa

PF20207PedC-like48-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G045340	`PF00085`	Thioredoxin	27	127	6.8e-24	84.6
TkA05G045340	`PF14595`	Thioredoxin_9	31	109	0.00016	22.3
TkA05G045340	`PF13899`	Thioredoxin_7	34	63	0.00045	21.0
TkA05G045340	`PF13098`	Thioredoxin_2	36	126	3.4e-10	41.0
TkA05G045340	`PF00578`	AhpC-TSA	36	89	0.0029	18.2
TkA05G045340	`PF08534`	Redoxin	36	76	0.0033	18.0
TkA05G045340	`PF13905`	Thioredoxin_8	47	88	0.0015	19.6
TkA05G045340	`PF20207`	PedC-like	48	121	0.011	16.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C9Y6`	Arabidopsis thaliana	sp\|Q9C9Y6\|TRXH9_ARATH Thioredoxin H9	67.400%	Swiss-Prot	High
`Q9AS75`	Oryza sativa subsp. japonica	sp\|Q9AS75\|TRH41_ORYSJ Thioredoxin H4-1	60.900%	Swiss-Prot	High
`Q0DKF1`	Oryza sativa subsp. japonica	sp\|Q0DKF1\|TRH42_ORYSJ Thioredoxin H4-2	62.800%	Swiss-Prot	High
`Q75GM1`	Oryza sativa subsp. japonica	sp\|Q75GM1\|TRXH5_ORYSJ Thioredoxin H5	46.900%	Swiss-Prot	Medium

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