TkA05G038750 | RubberDandelionOmics

Gene overview

TkA05G038750

Reference: TK1151 Chr: Chr05 Coordinates: 10506233-10506780 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

318 bp · TkA05G038750|TK1151|cDNA

CTTGGAGCTGCAATGTTTTATGCATGTGTGGAGGATAGTGGTGTTGTATATACGGGAGATTATAACATGACACCTGATAGGCATCTTGGAGCAGCTCAAATTGACCGATTGCAATTAGACCTTCTTATAACCGAGTCAACATATGCAACAACTATTTGCGATTCAAAATATGCTCGAGAGAGGGAATTTCTTAAAGATGTTCATAAATGTGTTGCTAATGGAGGAAAGGTCCTGATTCCTACATTTGCTCTTGGACGTGC...

CDS

Download CDS FASTA

306 bp · TkA05G038750|TK1151|CDS

ATGTTTTATGCATGTGTGGAGGATAGTGGTGTTGTATATACGGGAGATTATAACATGACACCTGATAGGCATCTTGGAGCAGCTCAAATTGACCGATTGCAATTAGACCTTCTTATAACCGAGTCAACATATGCAACAACTATTTGCGATTCAAAATATGCTCGAGAGAGGGAATTTCTTAAAGATGTTCATAAATGTGTTGCTAATGGAGGAAAGGTCCTGATTCCTACATTTGCTCTTGGACGTGCTCAGGAACTTTG...

Protein

Download Protein FASTA

102 aa · TkA05G038750|TK1151|PROTEIN

MFYACVEDSGVVYTGDYNMTPDRHLGAAQIDRLQLDLLITESTYATTICDSKYAREREFLKDVHKCVANGGKVLIPTFALGRAQELCILLDDYWEQMNLKVP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G038750`
TK1151 ID	TkA05G038750
OH-1004 ID	LXL04_005552
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.000
Protein coverage (%)	TK1151 100.000 / OH-1004 40.637 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G038750

Location Chr05:10506233-10506780 (+)

Description Similar to CPSF73-II: Cleavage and polyadenylation specificity factor subunit 3-II

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g01730`	Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition.	Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies.2009 · DOI: 10.1104/pp.109.142729

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005552 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006397 mRNA processing Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0016180 snRNA processing Biological Process

GO:0034243 regulation of transcription elongation by RNA polymerase II Biological Process

GO:0034472 snRNA 3'-end processing Biological Process

GO:0160240 RNA polymerase II transcription initiation surveillance Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0032039 integrator complex Cellular Component

GO:0160232 INTAC complex Cellular Component

KEGG gene cross-reference

ath:AT2G01730

ddi:DDB_G0278189

dme:Dmel_CG1972

gga:419418

rno:298688

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.550

Rank 1 · TkA05G038750 · TK1151

Nucleus0.422

Rank 2 · TkA05G038750 · TK1151

Mitochondrion0.070

Rank 3 · TkA05G038750 · TK1151

Endoplasmic reticulum0.062

Rank 4 · TkA05G038750 · TK1151

Cell membrane0.051

Rank 5 · TkA05G038750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GUU3`	Arabidopsis thaliana	sp\|Q8GUU3\|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II	79.400%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card