Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1167 bp · TkA05G028970|TK1151|cDNA
ATGCAATTCGACGAAGCAGACACCTTATGTAAAAGAACCCTAGAAATCCACAGAGTCCACAGTCCACCAGCATCCCTCGAAGAAGCAGCAGACACCACCGATCCACCGCCGCCTCCGTCGTCTGACACCGATTCCACGGTTGATGGTTCTCAATGTGATTCATACATTCCAACTCCATTTTATCGCCTACCAAGCTCCGCCCAGACATCTCCGTTATCAAAATCTCCATGGTCGTCGTACACAGAGCGACCGGATCCGGC...
1167 bp · TkA05G028970|TK1151|CDS
ATGCAATTCGACGAAGCAGACACCTTATGTAAAAGAACCCTAGAAATCCACAGAGTCCACAGTCCACCAGCATCCCTCGAAGAAGCAGCAGACACCACCGATCCACCGCCGCCTCCGTCGTCTGACACCGATTCCACGGTTGATGGTTCTCAATGTGATTCATACATTCCAACTCCATTTTATCGCCTACCAAGCTCCGCCCAGACATCTCCGTTATCAAAATCTCCATGGTCGTCGTACACAGAGCGACCGGATCCGGC...
Protein
Download Protein FASTA388 aa · TkA05G028970|TK1151|PROTEIN
MQFDEADTLCKRTLEIHRVHSPPASLEEAADTTDPPPPPSSDTDSTVDGSQCDSYIPTPFYRLPSSAQTSPLSKSPWSSYTERPDPAATDTSDDYVGLMTSLVREEGHIYSLAASGDLLYTGSSSKNIRVWKSQKEYSGFKAHSGLVKSIVLSGGKIFTGHQDGKIRVWKALTRDPKVHKKIGTLPSCNTLILYPATTASHSRIPAAFLSVFFCNTGDLQPHSAVKPCLHYGMFYGIFRRVFRQGQPPPATLAMVAGGGG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA05G028970 |
|---|---|
| TK1151 ID | TkA05G028970 |
| OH-1004 ID | LXL04_003965 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 96.900 |
| Protein coverage (%) | TK1151 49.485 / OH-1004 82.759Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA05G028970 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr05:7842031-7844562 (+) | |||||||||
| Description | Similar to JGB: Protein JINGUBANG | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009846 pollen germination Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005874 microtubule Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT2G26490 ath:AT4G10840 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF23381Beta-prop_IFT122_1st102-177 aaPF24817WD40_WDHD1_1st103-193 aaPF00400WD40106-131 aaPF25171Beta-prop_WDR36-Utp21_1st106-184 aaPF24807WD40_CDC20-Fz107-175 aaPF25048Beta-prop_TEP1_C107-135 aaPF24017Beta-prop_SCAP109-174 aaPF25173Beta-prop_WDR3_1st113-172 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA05G028970 | PF23381 | Beta-prop_IFT122_1st | 102 | 177 | 0.00044 | 20.4 |
| TkA05G028970 | PF24817 | WD40_WDHD1_1st | 103 | 193 | 3.8e-06 | 27.0 |
| TkA05G028970 | PF00400 | WD40 | 106 | 131 | 6.9e-08 | 33.4 |
| TkA05G028970 | PF25171 | Beta-prop_WDR36-Utp21_1st | 106 | 184 | 0.00044 | 20.5 |
| TkA05G028970 | PF24807 | WD40_CDC20-Fz | 107 | 175 | 0.012 | 15.6 |
| TkA05G028970 | PF25048 | Beta-prop_TEP1_C | 107 | 135 | 0.025 | 15.3 |
| TkA05G028970 | PF24017 | Beta-prop_SCAP | 109 | 174 | 0.023 | 14.2 |
| TkA05G028970 | PF25173 | Beta-prop_WDR3_1st | 113 | 172 | 0.00026 | 21.5 |
| TkA05G028970 | PF24796 | WDR55 | 113 | 171 | 0.31 | 10.8 |
| TkA05G028970 | PF25174 | Beta-prop_THOC3 | 114 | 175 | 0.00011 | 22.0 |
| TkA05G028970 | PF25175 | Beta-prop_WDR5 | 114 | 173 | 0.00032 | 20.8 |
| TkA05G028970 | PF23409 | Beta-prop_EML | 114 | 172 | 0.004 | 17.4 |
| TkA05G028970 | PF25172 | Beta-prop_WDR3_2nd | 114 | 171 | 0.028 | 14.4 |
| TkA05G028970 | PF24805 | EIF3I | 114 | 172 | 0.088 | 12.6 |
| TkA05G028970 | PF24814 | WD40_Prp19 | 115 | 170 | 0.0021 | 17.9 |
| TkA05G028970 | PF23754 | Beta-prop_IP5PC_F | 115 | 170 | 0.0031 | 17.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.