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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G007210
Reference: TK1151 Chr: Chr05 Coordinates: 2125136-2132928 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3577 bp · TkA05G007210|TK1151|cDNA

CATGTCATCTTCTTATAGGTAAGAAGGCAAGCACATATCTGTCTCCGTGATGTAATGCAAGGCTTCCGGGAAACACCAGTGATGTCACCTGCTAGTGAAGCCATTGCAAGCACCTTTGAGAGGTTCCTTCTGCTTGCTGGAGGATCAAATACAAACACTTCAGAAGGTTCAAGAGCCCAAGAAGTCCTATATGTTCTTGATGCTCTAAAAGATACTCTTCCCCTTATGTCTCTCAAATTCTCAACAAAGATTCTGAACTA...

CDS

Download CDS FASTA

3840 bp · TkA05G007210|TK1151|CDS

ATGGACGCCCCAGTGCTGTTGCAGCTTACCGGCGATATGGAACACGACAATCGATCTGACGGCGACTTCTGCAGCTCGATCCTCTCACGGTTTACCAACTCCACAGACCCCCAACACCACCACCTCTGTTCCATCATTGGCGATATATCTCAAGGTCTCAAAGACCTCAACCACCCTCTTACTCCCCTCGCCTATTTCGGCGCCACCTGTACTTCTCTCGATAAGCTCTTATCTTCTGTACCCAACCCGCCGTCTCACCA...

Protein

Download Protein FASTA

1279 aa · TkA05G007210|TK1151|PROTEIN

MDAPVLLQLTGDMEHDNRSDGDFCSSILSRFTNSTDPQHHHLCSIIGDISQGLKDLNHPLTPLAYFGATCTSLDKLLSSVPNPPSHHVDALITIISMVLPRITPAVLRKESDYVSCLITRLILSGGVTDSVVASGLKCISHLLVVGHRSNWSDVSHLFGVLLGFIADSRLKVRRQAHICLRDVMQGFRETPVMSPASEAIASTFERFLLLAGGSNTNTSEGSRAQEVLYVLDALKDTLPLMSLKFSTKILNYFKSLLALH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G007210
TK1151 IDTkA05G007210
OH-1004 IDLXL04_018982
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)98.000
Protein coverage (%)TK1151 100.000 / OH-1004 96.426
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G007210
LocationChr05:2125136-2132928 (-)
DescriptionSimilar to RRP12: RRP12-like protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018982 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Biological Process
GO:0042254 ribosome biogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005840 ribosome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0030686 90S preribosome Cellular Component
GO:0030688 preribosome, small subunit precursor Cellular Component
GO:0031965 nuclear membrane Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
dre:563195
gga:423845
hsa:23223
mmu:107094
sce:YPL012W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.925
Rank 1 · TkA05G007210 · TK1151
Cytoplasm0.120
Rank 2 · TkA05G007210 · TK1151
Cell membrane0.034
Rank 3 · TkA05G007210 · TK1151
Endoplasmic reticulum0.021
Rank 4 · TkA05G007210 · TK1151
Golgi apparatus0.013
Rank 5 · TkA05G007210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25772HEAT_RRP12_N14-283 aa
PF26290DUF807984-119 aa
PF08161RRP12_HEAT118-162 aa
PF21047HEAT_Maestro133-180 aa
PF02985HEAT159-186 aa
PF11728ArAE_1_C172-235 aa
PF27927DH2-like279-325 aa
PF26290DUF8079334-405 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G007210PF25772HEAT_RRP12_N142832.1e-101339.5
TkA05G007210PF26290DUF8079841190.2611.6
TkA05G007210PF08161RRP12_HEAT1181623.7e-80270.1
TkA05G007210PF21047HEAT_Maestro1331800.1812.3
TkA05G007210PF02985HEAT1591860.08213.9
TkA05G007210PF11728ArAE_1_C1722350.02315.6
TkA05G007210PF27927DH2-like2793250.1912.7
TkA05G007210PF26290DUF80793344050.2611.6
TkA05G007210PF08161RRP12_HEAT3486543.7e-80270.1
TkA05G007210PF21047HEAT_Maestro5796030.1812.3
TkA05G007210PF26290DUF80796156850.2611.6
TkA05G007210PF21047HEAT_Maestro7437770.1812.3
TkA05G007210PF21047HEAT_Maestro7458530.1812.3
TkA05G007210PF11728ArAE_1_C7468470.02315.6
TkA05G007210PF08161RRP12_HEAT7508193.7e-80270.1
TkA05G007210PF02985HEAT7507750.08213.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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