TkA05G005240 | RubberDandelionOmics

Gene overview

TkA05G005240

Reference: TK1151 Chr: Chr05 Coordinates: 1550275-1552537 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1590 bp · TkA05G005240|TK1151|cDNA

TACAAGTTTTATAGAAAATAAAATAAAAAAATAAACAGAACCTTTTTTCAAATAAAAATAAATGTATATCATGTATTACATATTATTATATTACCCGATGAGACAGTCAGACAACATATACATATACGAAGCTCATTGATTCAGAAAAACAAAAGGAAACTGTTTGTTTTGTATTAAATACATAGTATAGGGACCAAAGATGATAGTTTCCATAAAAAGACAATCGATAATTGCGGTTAGATAGAGCTACAAGTTACCAC...

CDS

Download CDS FASTA

885 bp · TkA05G005240|TK1151|CDS

ATGTACCTGGGGATGGATTCGAAAGAGTTGATGATGATCAAAATGGAGAAGCAGAATCATGTGGATATGGATATGGATATACTTTCTGACCCATTTTCATCACTGCCACTGGATACTGTCACTACTTCTGCTTTTGGGTCTACCCATGCTGACGACCAAAAGACTTCGTTAGGCCTAGGGTTCATGGAGCTACTTGGCTTTCAAGATTTCATCGCCACTAACTATTCATCTCCTTCCATCTTTGACAATATAATGATGCA...

Protein

Download Protein FASTA

294 aa · TkA05G005240|TK1151|PROTEIN

MYLGMDSKELMMIKMEKQNHVDMDMDILSDPFSSLPLDTVTTSAFGSTHADDQKTSLGLGFMELLGFQDFIATNYSSPSIFDNIMMHHHLAPSSLSMDMEIPTSSADHHKEEVDEVGEDSSVVLNVQPSSPNSSSLSSPHDAAKPLKQCMISKKTIGGDEAQTKTKTKTKKKKEREARFAFMTRTEIDHLDDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERCMGDPAFVVTTYEGQHIHPIPSAAPTRIPYF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G005240`
TK1151 ID	TkA05G005240
OH-1004 ID	LXL04_018952
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G005240

Location Chr05:1550275-1552537 (+)

Description Similar to WRKY28: WRKY transcription factor 28

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g29860`	Transcription factor.	No verified direct reference in this release
`At4g18170`	Transcription factor.	No verified direct reference in this release
`At2g47260`	Transcription factor.	No verified direct reference in this release
`At5g46350`	Transcription factor.	Wounding-induced WRKY8 is involved in basal defense in Arabidopsis.2010 · DOI: 10.1094/mpmi-23-5-0558 Arabidopsis transcription factor WRKY8 functions antagonistically with its interacting partner VQ9 to modulate salinity stress tolerance.2013 · DOI: 10.1111/tpj.12159 WRKY8 transcription factor functions in the TMV-cg defense response by mediating both abscisic acid and ethylene signaling in Arabidopsis.2013 · DOI: 10.1073/pnas.1221347110
`At5g49520`	Transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018952 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009624 response to nematode Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009733 response to auxin Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0042659 regulation of cell fate specification Biological Process

GO:0042742 defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT1G29860

ath:AT1G69310

ath:AT2G47260

ath:AT4G18170

ath:AT5G49520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.975

Rank 1 · TkA05G005240 · TK1151

Cytoplasm0.076

Rank 2 · TkA05G005240 · TK1151

Cell membrane0.028

Rank 3 · TkA05G005240 · TK1151

Endoplasmic reticulum0.025

Rank 4 · TkA05G005240 · TK1151

Plastid0.011

Rank 5 · TkA05G005240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03106WRKY191-248 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G005240	`PF03106`	WRKY	191	248	4.8e-27	94.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93WV4`	Arabidopsis thaliana	sp\|Q93WV4\|WRK71_ARATH WRKY transcription factor 71	78.400%	Swiss-Prot	Low
`Q8VWJ2`	Arabidopsis thaliana	sp\|Q8VWJ2\|WRK28_ARATH WRKY transcription factor 28	75.700%	Swiss-Prot	Low
`O22900`	Arabidopsis thaliana	sp\|O22900\|WRK23_ARATH WRKY transcription factor 23	82.900%	Swiss-Prot	Low
`Q9FL26`	Arabidopsis thaliana	sp\|Q9FL26\|WRKY8_ARATH WRKY transcription factor 8	75.700%	Swiss-Prot	Low
`Q9FGZ4`	Arabidopsis thaliana	sp\|Q9FGZ4\|WRK48_ARATH Probable WRKY transcription factor 48	55.600%	Swiss-Prot	Low

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