TkA05G005130 | RubberDandelionOmics

Gene overview

TkA05G005130

Reference: TK1151 Chr: Chr05 Coordinates: 1512221-1513564 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

396 bp · TkA05G005130|TK1151|cDNA

CCTTCTCTCTACCTCTCGATCTCGAATTTGTCTCTCTCTCTGTGCCGATCTTCTTTGTGGTTCCGATCTTCTCAGCGCAATTCGAATACTCTGTCGCCGAAATCGGAAGAGCCTGATAAGGCATCAGGAACAATCAAGGAACAACTTGCTGCAATTGCACCAGCTTTAGAACAACTATGGAAGCAAAAGGAAGAGAGAATAAAGGAGTTGATAGATGTACAATCACAAATACAAAAAATATGTGGAGAAATTGCAGGGAG...

CDS

Download CDS FASTA

396 bp · TkA05G005130|TK1151|CDS

CCTTCTCTCTACCTCTCGATCTCGAATTTGTCTCTCTCTCTGTGCCGATCTTCTTTGTGGTTCCGATCTTCTCAGCGCAATTCGAATACTCTGTCGCCGAAATCGGAAGAGCCTGATAAGGCATCAGGAACAATCAAGGAACAACTTGCTGCAATTGCACCAGCTTTAGAACAACTATGGAAGCAAAAGGAAGAGAGAATAAAGGAGTTGATAGATGTACAATCACAAATACAAAAAATATGTGGAGAAATTGCAGGGAG...

Protein

Download Protein FASTA

131 aa · TkA05G005130|TK1151|PROTEIN

PSLYLSISNLSLSLCRSSLWFRSSQRNSNTLSPKSEEPDKASGTIKEQLAAIAPALEQLWKQKEERIKELIDVQSQIQKICGEIAGSNQQSESPIVDESDLSFKKLLEFHDQLKDLQKENVQIYPQPLNLL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G005130`
TK1151 ID	TkA05G005130
OH-1004 ID	LXL04_031009
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.100
Protein coverage (%)	TK1151 62.595 / OH-1004 6.914 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G005130

Location Chr05:1512221-1513564 (-)

Description Similar to MAP65-1: 65-kDa microtubule-associated protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g55230`	Microtubule-associated protein that bundle and stabilize adjacent microtubules (MT) of the cell cortex.	In vivo dynamics and differential microtubule-binding activities of MAP65 proteins.2004 · DOI: 10.1104/pp.104.051623 Two microtubule-associated proteins of the Arabidopsis MAP65 family function differently on microtubules.2005 · DOI: 10.1104/pp.104.052456 Dynamic interaction of NtMAP65-1a with microtubules in vivo.2005 · DOI: 10.1242/jcs.02433 Modulated targeting of GFP-AtMAP65-1 to central spindle microtubules during division.2005 · DOI: 10.1111/j.1365-313x.2005.02464.x Control of the AtMAP65-1 interaction with microtubules through the cell cycle.2006 · DOI: 10.1242/jcs.03051 AtMAP65-1 binds to tubulin dimers to promote tubulin assembly.2007 · DOI: 10.5483/bmbrep.2007.40.2.218 Two microtubule-associated proteins of Arabidopsis MAP65s promote antiparallel microtubule bundling.2008 · DOI: 10.1091/mbc.e08-04-0341 Arabidopsis homologs of nucleus- and phragmoplast-localized kinase 2 and 3 and mitogen-activated protein kinase 4 are essential for microtubule organization.2010 · DOI: 10.1105/tpc.109.071746
`At4g26760`	Microtubule-associated protein that stabilize microtubules (MT).	Arabidopsis microtubule-associated protein AtMAP65-2 acts as a microtubule stabilizer.2009 · DOI: 10.1007/s11103-008-9426-1
`At1g14690`	65-kDa microtubule-associated protein 7.	No verified direct reference in this release
`At5g51600`	Microtubule-associated protein that plays a critical role in organizing the mitotic microtubule array during both early and late mitosis in all plant organs.	The plant microtubule-associated protein AtMAP65-3/PLE is essential for cytokinetic phragmoplast function.2004 · DOI: 10.1016/j.cub.2004.02.032 MAP65-3 microtubule-associated protein is essential for nematode-induced giant cell ontogenesis in Arabidopsis.2008 · DOI: 10.1105/tpc.107.057422

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031009 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0001578 microtubule bundle formation Biological Process

GO:0007020 microtubule nucleation Biological Process

GO:0031116 positive regulation of microtubule polymerization Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0046785 microtubule polymerization Biological Process

GO:0048528 post-embryonic root development Biological Process

GO:0051301 cell division Biological Process

GO:0000922 spindle pole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G14690

ath:AT4G26760

ath:AT5G55230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.501

Rank 1 · TkA05G005130 · TK1151

Nucleus0.458

Rank 2 · TkA05G005130 · TK1151

Mitochondrion0.080

Rank 3 · TkA05G005130 · TK1151

Endoplasmic reticulum0.059

Rank 4 · TkA05G005130 · TK1151

Cell membrane0.057

Rank 5 · TkA05G005130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30750DUF87231-24 aa

PF25762HAUS12-122 aa

PF14282FlxA24-92 aa

PF03999MAP65_ASE127-121 aa

PF01923Cob_adeno_trans30-101 aa

PF20648DUF680930-43 aa

PF17675APG6_N37-122 aa

PF04089BRICHOS41-84 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G005130	`PF30750`	DUF8723	1	24	0.12	12.8
TkA05G005130	`PF25762`	HAUS1	2	122	8.3e-05	23.2
TkA05G005130	`PF14282`	FlxA	24	92	5.6	8.0
TkA05G005130	`PF03999`	MAP65_ASE1	27	121	3e-09	36.8
TkA05G005130	`PF01923`	Cob_adeno_trans	30	101	0.018	15.8
TkA05G005130	`PF20648`	DUF6809	30	43	0.15	13.6
TkA05G005130	`PF17675`	APG6_N	37	122	0.051	14.7
TkA05G005130	`PF04089`	BRICHOS	41	84	0.12	13.3
TkA05G005130	`PF30750`	DUF8723	45	89	0.12	12.8
TkA05G005130	`PF20648`	DUF6809	56	120	0.15	13.6
TkA05G005130	`PF14282`	FlxA	110	118	5.6	8.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLP0`	Arabidopsis thaliana	sp\|Q9FLP0\|MA651_ARATH 65-kDa microtubule-associated protein 1	75.600%	Swiss-Prot	Medium
`Q8LEG3`	Arabidopsis thaliana	sp\|Q8LEG3\|MA652_ARATH 65-kDa microtubule-associated protein 2	65.900%	Swiss-Prot	Medium
`Q8L836`	Arabidopsis thaliana	sp\|Q8L836\|MA657_ARATH 65-kDa microtubule-associated protein 7	44.100%	Swiss-Prot	Medium
`Q9FHM4`	Arabidopsis thaliana	sp\|Q9FHM4\|MA653_ARATH 65-kDa microtubule-associated protein 3	41.700%	Swiss-Prot	Medium

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