TkA05G004450 | RubberDandelionOmics

Gene overview

TkA05G004450

Reference: TK1151 Chr: Chr05 Coordinates: 1320145-1322229 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1209 bp · TkA05G004450|TK1151|cDNA

GTCGGGTAGAGCTTGGATTTTTACCGTAACGGCGTCGATACCTTCTCCACAAACCTATGATTGTACCCTACCCGATATAGATTATTTCCAAATCTTCTATCGTGTTCTAATTCGCTTCACTTTCGTACAGGAATTGTGTTTTGAATTTGCGATTTGTGGTGCGAAATCTTAGAATGAGAGTAGAAGGGGATTCGGAGACGAACACATCATCAACTATACCAGAATCTGAATCTGTTCATGTAAATGTATCTGCATCTGTA...

CDS

Download CDS FASTA

915 bp · TkA05G004450|TK1151|CDS

ATGAGAGTAGAAGGGGATTCGGAGACGAACACATCATCAACTATACCAGAATCTGAATCTGTTCATGTAAATGTATCTGCATCTGTAACGGCTTCGCCATCATCATCCACAGTAGCTTCCCCAAGTGGAAAACGGAGCAGGGATCCTGAAGATGAGGTGTACGTCGATAATGTCCACTCCCATAAGCGTTCTCTCAGCGAGATGATGGCTTCCAGCTCAAATGGGCTATCAGTGGGAGACTCTCTTCTTGAAAATCTGAT...

Protein

Download Protein FASTA

304 aa · TkA05G004450|TK1151|PROTEIN

MRVEGDSETNTSSTIPESESVHVNVSASVTASPSSSTVASPSGKRSRDPEDEVYVDNVHSHKRSLSEMMASSSNGLSVGDSLLENLMDSPARSESMFYYLRYCESNTCSPSPSQTDSQPTSPVSSYRCMISKITAGGDEAQTKTKTKKKKKREARFAFMTRTEIDHLDDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERCMGDPAFVTTYEGQHIHSTPSAAPTRIPYFNYNLNPTTYAPAMVQGGLNCHLTT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G004450`
TK1151 ID	TkA05G004450
OH-1004 ID	LXL04_018924
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA05G004450

Location Chr05:1320145-1322229 (+)

Description Similar to WRKY23: WRKY transcription factor 23

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47260`	Transcription factor.	No verified direct reference in this release
`At1g29860`	Transcription factor.	No verified direct reference in this release
`At1g69310`	Transcription factor.	No verified direct reference in this release
`At5g49520`	Transcription factor.	No verified direct reference in this release
`At4g18170`	Transcription factor.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018924 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009624 response to nematode Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009733 response to auxin Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0042659 regulation of cell fate specification Biological Process

GO:0042742 defense response to bacterium Biological Process

KEGG gene cross-reference

ath:AT1G29860

ath:AT1G69310

ath:AT2G47260

ath:AT4G18170

ath:AT5G49520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.925

Rank 1 · TkA05G004450 · TK1151

Cytoplasm0.201

Rank 2 · TkA05G004450 · TK1151

Mitochondrion0.027

Rank 3 · TkA05G004450 · TK1151

Cell membrane0.021

Rank 4 · TkA05G004450 · TK1151

Endoplasmic reticulum0.011

Rank 5 · TkA05G004450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01805Surp79-100 aa

PF03106WRKY121-131 aa

PF01805Surp142-182 aa

PF03106WRKY168-223 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G004450	`PF01805`	Surp	79	100	0.061	13.7
TkA05G004450	`PF03106`	WRKY	121	131	1.9e-25	89.6
TkA05G004450	`PF01805`	Surp	142	182	0.061	13.7
TkA05G004450	`PF03106`	WRKY	168	223	1.9e-25	89.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22900`	Arabidopsis thaliana	sp\|O22900\|WRK23_ARATH WRKY transcription factor 23	79.700%	Swiss-Prot	Low
`Q93WV4`	Arabidopsis thaliana	sp\|Q93WV4\|WRK71_ARATH WRKY transcription factor 71	75.700%	Swiss-Prot	Low
`Q9C983`	Arabidopsis thaliana	sp\|Q9C983\|WRK57_ARATH Probable WRKY transcription factor 57	75.000%	Swiss-Prot	Low
`Q9FGZ4`	Arabidopsis thaliana	sp\|Q9FGZ4\|WRK48_ARATH Probable WRKY transcription factor 48	74.300%	Swiss-Prot	Low
`Q8VWJ2`	Arabidopsis thaliana	sp\|Q8VWJ2\|WRK28_ARATH WRKY transcription factor 28	73.000%	Swiss-Prot	Low

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