TkA05G002580 | RubberDandelionOmics

Gene overview

TkA05G002580

Reference: TK1151 Chr: Chr05 Coordinates: 791853-798082 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2395 bp · TkA05G002580|TK1151|cDNA

CCCTCGGTTTCTCATATTCAAGTTAGCATTTGGACAGATGGTTGTATCCTCCAGACAGATCAACACACGATAAAATTAGTATTAGGACACTCCTAAGTGCTAAAACAAGCCTTCATATGTCTTAACTTCAGATTCAGTGTTTGGAAACCAAGTACTTATCACAACGAATTGAAACATTAACTACCCACACAACTATATATATCCCAATTGGGCTTTTAACGCTATATATCCAGCTACTACCTTCAAGCTTCCCTTAACTT...

CDS

Download CDS FASTA

1368 bp · TkA05G002580|TK1151|CDS

ATGTTTTTATACTTTGTAAAATCCGAAATGTCGACTCCATGCGGATTACCCGCACGAACCGTCCTCACAAGTTACTACAAAAGCAAACACTTCAAAACCCGTACACGCGACCTTTACAATGATCAAACAAGCCCCGATGAAGCCATTTTATGCGACGACAGTAACCAAAGCATGTACTGTCAGCTGCTAGCGGGACTTATCCACCGCCAACATGTCATGCGGCTCGGAGCCGTGTTTGCTTCGGCTTTACTCCGTGCAAT...

Protein

Download Protein FASTA

455 aa · TkA05G002580|TK1151|PROTEIN

MFLYFVKSEMSTPCGLPARTVLTSYYKSKHFKTRTRDLYNDQTSPDEAILCDDSNQSMYCQLLAGLIHRQHVMRLGAVFASALLRAISFLERNWLSLCSDIRTGQLNRMITDSGCRSAMSAMLKLADPSLADEIEDICSRRSWKGIVCDLWPKAKYIEAVVTGSMSQYIPALEYYSRGKLPLVCTMYASSECYFGVNLKPLCDPENVAFTLLPNMGYYEFIPLGENETYGNEDEEISVDKLVELVDVKLGCYYELVVTTF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G002580`
TK1151 ID	TkA05G002580
OH-1004 ID	LXL04_018880
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 75.960 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G002580

Location Chr05:791853-798082 (-)

Description Similar to GH3.9: Putative indole-3-acetic acid-amido synthetase GH3.9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47750`	Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.	No verified direct reference in this release
`At1g28130`	Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.	Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid.2005 · DOI: 10.1105/tpc.104.026690
`At4g27260`	Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.	Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid.2005 · DOI: 10.1105/tpc.104.026690
`At5g54510`	Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.	DFL1, an auxin-responsive GH3 gene homologue, negatively regulates shoot cell elongation and lateral root formation, and positively regulates the light response of hypocotyl length.2001 · DOI: 10.1046/j.1365-313x.2001.00957.x Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid.2005 · DOI: 10.1105/tpc.104.026690

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0671500`	May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018880 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009416 response to light stimulus Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010120 camalexin biosynthetic process Biological Process

GO:0140964 intracellular auxin homeostasis Biological Process

GO:1901183 positive regulation of camalexin biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0010279 indole-3-acetic acid amido synthetase activity Molecular Function

GO:0016881 acid-amino acid ligase activity Molecular Function

KEGG gene cross-reference

ath:AT1G28130

ath:AT2G47750

ath:AT4G27260

ath:AT5G54510

osa:4344247

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.619

Rank 1 · TkA05G002580 · TK1151

Cytoplasm0.254

Rank 2 · TkA05G002580 · TK1151

Mitochondrion0.064

Rank 3 · TkA05G002580 · TK1151

Plastid0.054

Rank 4 · TkA05G002580 · TK1151

Cell membrane0.032

Rank 5 · TkA05G002580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03321GH31-178 aa

PF23571GH3_M209-289 aa

PF23572GH3_C304-431 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G002580	`PF03321`	GH3	1	178	7.5e-63	213.2
TkA05G002580	`PF23571`	GH3_M	209	289	5e-30	104.1
TkA05G002580	`PF23572`	GH3_C	304	431	6.2e-36	124.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82243`	Arabidopsis thaliana	sp\|O82243\|GH39_ARATH Putative indole-3-acetic acid-amido synthetase GH3.9	68.600%	Swiss-Prot	High
`Q9FZ87`	Arabidopsis thaliana	sp\|Q9FZ87\|GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17	58.100%	Swiss-Prot	High
`O81829`	Arabidopsis thaliana	sp\|O81829\|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5	56.800%	Swiss-Prot	High
`Q9LSQ4`	Arabidopsis thaliana	sp\|Q9LSQ4\|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6	56.600%	Swiss-Prot	High
`P0C0M3`	Oryza sativa subsp. japonica	sp\|P0C0M3\|GH311_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.11	65.400%	Swiss-Prot	High

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