TkA04G517380 | RubberDandelionOmics

Gene overview

TkA04G517380

Reference: TK1151 Chr: Chr04 Coordinates: 130740456-130747096 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2379 bp · TkA04G517380|TK1151|cDNA

GGAGAAGGGGGGAGGGGTAAACGTCGTGTGAGGCGCCACTCTTCAGATCTAACTTCAATTCAAACCCTACGCCCGCCTCTCTTCTCTCTCACGCAAAACGGCAAGAAGTAAAAACCCTAAATCGACCTGTGAGGCGCCGATAGTGACAACCGCGCTAGAAGCACCGACAAGCGACAACCGAGCGTGAAGCGCCGCAGCTTCTCCGTCTCCTACAAGCAGGCGTCCCTGAGATTGAAGAGCTCCTGCCTCGATTTTCATTT...

CDS

Download CDS FASTA

1617 bp · TkA04G517380|TK1151|CDS

ATGAACACGAACGAAGCCAGCACTTCCGGCGGCGGTAAATTTCACACCGTGCAGCCTCTTCGCGACTTAAAATCAAATTGGGAGGTAGATCTTGCCAATGATCTCCAAGAGTATTTGCTAAAGATATGCTCCGGTGAGATTACCGGCGGTCAAGATGATAGTCACCTATCTGTGAATTTCGCGGAAGCTGCGTTGCTGCTTCAAGGTTCAATTCAGGTGTACAGCCGGAAGGTTGAATATCTGTATTCCTTGGTTGTTCA...

Protein

Download Protein FASTA

538 aa · TkA04G517380|TK1151|PROTEIN

MNTNEASTSGGGKFHTVQPLRDLKSNWEVDLANDLQEYLLKICSGEITGGQDDSHLSVNFAEAALLLQGSIQVYSRKVEYLYSLVVHALEFISQQSQQHDKPDNTPNQEEETTPSVTPIESDDSFWVSDDIPIDAKNSLDRSKDSNTPLNSHVKPPANLVVLEGDCLDTSGDSGELESYLLATNDLYKDFILLDGCDAITVDEFLSGNDEINKNKNNSRCSSIGSKSRKTFMSPSRRSGGLFMSPNKRSAGKDVDPGQSQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G517380`
TK1151 ID	TkA04G517380
OH-1004 ID	LXL04_039280
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.300
Protein coverage (%)	TK1151 99.257 / OH-1004 82.335 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G517380

Location Chr04:130740456-130747096 (-)

Description Similar to CAPH2: Condensin-2 complex subunit H2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16730`	Regulatory subunit of the condensin-2 complex, a complex that seems to provide chromosomes with an additional level of organization and rigidity and in establishing mitotic chromosome architecture (By similarity).	Condensin II alleviates DNA damage and is essential for tolerance of boron overload stress in Arabidopsis.2011 · DOI: 10.1105/tpc.111.086314

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_039280 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006974 DNA damage response Biological Process

GO:0007076 mitotic chromosome condensation Biological Process

GO:0007143 female meiotic nuclear division Biological Process

GO:0010032 meiotic chromosome condensation Biological Process

GO:0045739 positive regulation of DNA repair Biological Process

GO:0051306 mitotic sister chromatid separation Biological Process

GO:0051309 female meiosis chromosome separation Biological Process

GO:0051984 positive regulation of chromosome segregation Biological Process

GO:1905820 positive regulation of chromosome separation Biological Process

GO:1905821 positive regulation of chromosome condensation Biological Process

GO:0000793 condensed chromosome Cellular Component

GO:0000794 condensed nuclear chromosome Cellular Component

KEGG gene cross-reference

ath:AT3G16730

hsa:29781

mmu:52683

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.955

Rank 1 · TkA04G517380 · TK1151

Cytoplasm0.184

Rank 2 · TkA04G517380 · TK1151

Mitochondrion0.018

Rank 3 · TkA04G517380 · TK1151

Cell membrane0.016

Rank 4 · TkA04G517380 · TK1151

Endoplasmic reticulum0.008

Rank 5 · TkA04G517380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06278CNDH2_N14-132 aa

PF04825Rad21_Rec8_N65-106 aa

PF16869CNDH2_M96-124 aa

PF16869CNDH2_M154-295 aa

PF14712Snapin_Pallidin353-379 aa

PF16869CNDH2_M384-402 aa

PF16858CNDH2_C452-534 aa

PF14712Snapin_Pallidin454-508 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G517380	`PF06278`	CNDH2_N	14	132	2e-41	141.4
TkA04G517380	`PF04825`	Rad21_Rec8_N	65	106	0.025	15.5
TkA04G517380	`PF16869`	CNDH2_M	96	124	4.2e-25	89.8
TkA04G517380	`PF16869`	CNDH2_M	154	295	4.2e-25	89.8
TkA04G517380	`PF14712`	Snapin_Pallidin	353	379	0.26	12.5
TkA04G517380	`PF16869`	CNDH2_M	384	402	4.2e-25	89.8
TkA04G517380	`PF16858`	CNDH2_C	452	534	7.7e-24	84.9
TkA04G517380	`PF14712`	Snapin_Pallidin	454	508	0.26	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LUR0`	Arabidopsis thaliana	sp\|Q9LUR0\|CNDH2_ARATH Condensin-2 complex subunit H2	49.700%	Swiss-Prot	Medium

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