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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G499960
Reference: TK1151 Chr: Chr04 Coordinates: 126226214-126228079 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1623 bp · TkA04G499960|TK1151|cDNA

ATGTCTCAAACAAGAGCGAGGGCATTCCAAACGGTGAAATCTGTTAATTATTACTATAAGGTATGTAGTACTACAAATGCTTCACGCAGTTATTGCTCAAGTAGTTCCTTCAAAGCCCACCCTTTTGTTAAAGAAATTAGCACTCTTAGTTCTGCGGCCAAGAATGTGAGCTCTGATTTCCGAAACCCTAATGAGTTCCCAGGTGCTGGCACAAACTATAATGGATACGGCAAAGATTGGTCTACAGAAAGTAAAAGTGA...

CDS

Download CDS FASTA

1623 bp · TkA04G499960|TK1151|CDS

ATGTCTCAAACAAGAGCGAGGGCATTCCAAACGGTGAAATCTGTTAATTATTACTATAAGGTATGTAGTACTACAAATGCTTCACGCAGTTATTGCTCAAGTAGTTCCTTCAAAGCCCACCCTTTTGTTAAAGAAATTAGCACTCTTAGTTCTGCGGCCAAGAATGTGAGCTCTGATTTCCGAAACCCTAATGAGTTCCCAGGTGCTGGCACAAACTATAATGGATACGGCAAAGATTGGTCTACAGAAAGTAAAAGTGA...

Protein

Download Protein FASTA

540 aa · TkA04G499960|TK1151|PROTEIN

MSQTRARAFQTVKSVNYYYKVCSTTNASRSYCSSSSFKAHPFVKEISTLSSAAKNVSSDFRNPNEFPGAGTNYNGYGKDWSTESKSEYERHRKQLYNLNGNYPYNIMDHSSNRSIVVNDQLPNGSCSDMVNSQLQAVDERRLLGTIQELDAFCKNGKLKEAVEVLDLLEQNKVSVDIPRYLFLMKACGESQALTAAKHVHNHLTRSVPHLNVSIYNKILEMYSNCGSMEDAYKVFDKMPQRNLSSWDTMITGLAKNGHGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G499960
TK1151 IDTkA04G499960
OH-1004 IDLXL04_039054
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)86.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G499960
LocationChr04:126226214-126228079 (-)
DescriptionSimilar to PCMP-H63: Pentatricopeptide repeat-containing protein At4g32450, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g32450 Pentatricopeptide repeat-containing protein At4g32450, mitochondrial. No verified direct reference in this release
At2g25580 Pentatricopeptide repeat-containing protein At2g25580. No verified direct reference in this release
At2g34370 Pentatricopeptide repeat-containing protein At2g34370, mitochondrial. No verified direct reference in this release
At1g29710 Pentatricopeptide repeat-containing protein At1g29710, mitochondrial. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039054 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G29710
ath:AT2G15690
ath:AT2G25580
ath:AT2G34370
ath:AT4G32450
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.481
Rank 1 · TkA04G499960 · TK1151
Mitochondrion0.392
Rank 2 · TkA04G499960 · TK1151
Nucleus0.072
Rank 3 · TkA04G499960 · TK1151
Cytoplasm0.040
Rank 4 · TkA04G499960 · TK1151
Cell membrane0.012
Rank 5 · TkA04G499960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13408Zn_ribbon_recom16-40 aa
PF29070MSC6_N142-256 aa
PF22330Rib_mS39_PPR146-256 aa
PF13041PPR_2149-187 aa
PF01535PPR149-171 aa
PF13812PPR_3149-189 aa
PF23276TPR_24149-237 aa
PF17177PPR_long149-187 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G499960PF13408Zn_ribbon_recom16405.78.1
TkA04G499960PF29070MSC6_N1422563.5e-0730.4
TkA04G499960PF22330Rib_mS39_PPR1462560.05713.9
TkA04G499960PF13041PPR_21491872.3e-2279.6
TkA04G499960PF01535PPR1491714.7e-2277.3
TkA04G499960PF13812PPR_31491894.8e-1143.3
TkA04G499960PF23276TPR_241492376.2e-1039.8
TkA04G499960PF17177PPR_long1491873.8e-0730.4
TkA04G499960PF12854PPR_11501663.6e-2072.1
TkA04G499960PF17177PPR_long1803403.8e-0730.4
TkA04G499960PF12854PPR_12102383.6e-2072.1
TkA04G499960PF13812PPR_32102414.8e-1143.3
TkA04G499960PF13041PPR_22112442.3e-2279.6
TkA04G499960PF01535PPR2142424.7e-2277.3
TkA04G499960PF13041PPR_22422782.3e-2279.6
TkA04G499960PF12854PPR_12422683.6e-2072.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SUU7Arabidopsis thalianasp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450, mitochondrial51.500%Swiss-ProtHigh
Q680H3Arabidopsis thalianasp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g2558049.700%Swiss-ProtMedium
Q8S8Q7Arabidopsis thalianasp|Q8S8Q7|PP183_ARATH Pentatricopeptide repeat-containing protein At2g34370, mitochondrial46.300%Swiss-ProtMedium
Q9C6G2Arabidopsis thalianasp|Q9C6G2|PPR63_ARATH Pentatricopeptide repeat-containing protein At1g29710, mitochondrial42.800%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399037.600%Swiss-ProtMedium

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