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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G496770
Reference: TK1151 Chr: Chr04 Coordinates: 125445126-125446028 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

903 bp · TkA04G496770|TK1151|cDNA

ATGGCGAAAATCACTTCCATCCTCTTCTTCAATCTTAAACCTTACTATCTCTTATCATCCACCTCCTTATTCCGCCACCACCTCCCACCGTTAATCGGCCCCATTCCACCCACAGCCCAAAATGAATCACTATTTTCCCGACATTTCAGCAGCAGGACCACTTCTTCTCAGCCAACAATCACCTCAAAGCGCGACACCATGGTTAACTTCTCACTCTCCGACTCCGAATCCGACGATGACTCCCAATCTCCACCACCGCC...

CDS

Download CDS FASTA

903 bp · TkA04G496770|TK1151|CDS

ATGGCGAAAATCACTTCCATCCTCTTCTTCAATCTTAAACCTTACTATCTCTTATCATCCACCTCCTTATTCCGCCACCACCTCCCACCGTTAATCGGCCCCATTCCACCCACAGCCCAAAATGAATCACTATTTTCCCGACATTTCAGCAGCAGGACCACTTCTTCTCAGCCAACAATCACCTCAAAGCGCGACACCATGGTTAACTTCTCACTCTCCGACTCCGAATCCGACGATGACTCCCAATCTCCACCACCGCC...

Protein

Download Protein FASTA

300 aa · TkA04G496770|TK1151|PROTEIN

MAKITSILFFNLKPYYLLSSTSLFRHHLPPLIGPIPPTAQNESLFSRHFSSRTTSSQPTITSKRDTMVNFSLSDSESDDDSQSPPPPAAKEIDKSKLPPPYDPFKKTPVIQEPDDPTNLQEVFHKIRTDGLTDSAVKMFDGLSKDGLTHEALELFSQIKDKGQMPDVVAHTAVIEAYAAADKAKEALKVYMRMLASGVLPNAYTYAVLIKSLAGSGDEKLVGEAKKYIVEMMGKGIRPNPATCVAVMEGFVKGGKEEEGR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G496770
TK1151 IDTkA04G496770
OH-1004 IDLXL04_039029
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)88.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G496770
LocationChr04:125445126-125446028 (-)
DescriptionSimilar to At4g38150: Pentatricopeptide repeat-containing protein At4g38150
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039029 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT4G20090
ath:AT4G38150
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.693
Rank 1 · TkA04G496770 · TK1151
Plastid0.236
Rank 2 · TkA04G496770 · TK1151
Nucleus0.056
Rank 3 · TkA04G496770 · TK1151
Cytoplasm0.034
Rank 4 · TkA04G496770 · TK1151
Cell membrane0.011
Rank 5 · TkA04G496770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_3119-131 aa
PF12854PPR_1129-140 aa
PF29070MSC6_N136-221 aa
PF13041PPR_2138-178 aa
PF01535PPR138-162 aa
PF12854PPR_1140-158 aa
PF23276TPR_24146-248 aa
PF17177PPR_long149-283 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G496770PF13812PPR_31191318.3e-1658.6
TkA04G496770PF12854PPR_11291401.8e-0937.9
TkA04G496770PF29070MSC6_N1362217.4e-0729.3
TkA04G496770PF13041PPR_21381781.9e-2383.0
TkA04G496770PF01535PPR1381628e-1554.7
TkA04G496770PF12854PPR_11401581.8e-0937.9
TkA04G496770PF23276TPR_241462481.3e-0732.3
TkA04G496770PF17177PPR_long1492831.6e-0938.2
TkA04G496770PF13812PPR_31542118.3e-1658.6
TkA04G496770PF12854PPR_11611931.8e-0937.9
TkA04G496770PF13041PPR_21652131.9e-2383.0
TkA04G496770PF01535PPR1681988e-1554.7
TkA04G496770PF12854PPR_11972121.8e-0937.9
TkA04G496770PF01535PPR2182368e-1554.7
TkA04G496770PF13041PPR_22192521.9e-2383.0
TkA04G496770PF13812PPR_32302738.3e-1658.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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