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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G489140
Reference: TK1151 Chr: Chr04 Coordinates: 123692753-123696310 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2734 bp · TkA04G489140|TK1151|cDNA

TGGTCATTCACTTGCTCGTTTAAATTTCTCGATACGCGCTCTCTCTCTCTCTCTCCCTCTCTATCTCTCTCTCTCGTACACACTCCTCTTGCCTGATTTCTCTACTTTGACGCGATTCCGAAGATCTTCAGTAGCATTGTCCAATTTCACGGCTGGCAACGTAGATTCATGGCAGAGAAAACCCCCGAATTAGAAACCCTAACTTTGAGCATGAAGCTTTTGAAACTTGATGCGGACCAAACTCTAGAAGGATCCCCAAA...

CDS

Download CDS FASTA

2322 bp · TkA04G489140|TK1151|CDS

ATGGCAGAGAAAACCCCCGAATTAGAAACCCTAACTTTGAGCATGAAGCTTTTGAAACTTGATGCGGACCAAACTCTAGAAGGATCCCCAAATTGCGATTCAGAAAATGTTGTTAGCAATGGGGGCGAGAGTAACAGTGATATCCATTCCGATCAAGAGCAGCACACCCTTCCAATATTTGAAAAAATCGAAAAGTTGAGCAACAAAGTTAAGATTTTGAGAAGAGAACATATAGCATTAAGCAATGAAGTGAAAACCAT...

Protein

Download Protein FASTA

773 aa · TkA04G489140|TK1151|PROTEIN

MAEKTPELETLTLSMKLLKLDADQTLEGSPNCDSENVVSNGGESNSDIHSDQEQHTLPIFEKIEKLSNKVKILRREHIALSNEVKTITSDSLPGSEVFTALQNLGEEHETLKKKYQEECKTLKTKFHQESTERRKLYNEVIELKGNIRVFCRCRPLNQDEITKGSTSVVDFESAQENELKITASDSSKKQFKFDHIFRPEDNQEAVFSQTLPLVVSVLDGFNVCIFAYGQTGTGKTFTMEGNAENRGVNYRTLEELFKVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G489140
TK1151 IDTkA04G489140
OH-1004 IDLXL04_038977
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.500
Protein coverage (%)TK1151 99.871 / OH-1004 86.952
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G489140
LocationChr04:123692753-123696310 (-)
DescriptionSimilar to KIN14S: Kinesin-like protein KIN-14S
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g27550 Kinesin-like protein KIN-14S. No verified direct reference in this release
At2g22610 Kinesin-like protein KIN-14R. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0397900 Kinesin-like protein KIN-14J. No verified direct reference in this release
Os12g0616000 Kinesin-like protein KIN-14R. No verified direct reference in this release
Os03g0114000 Kinesin-like protein KIN-14E. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038977 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007017 microtubule-based process Biological Process
GO:0007018 microtubule-based movement Biological Process
GO:0051225 spindle assembly Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005871 kinesin complex Cellular Component
GO:0005874 microtubule Cellular Component
GO:0015630 microtubule cytoskeleton Cellular Component
GO:0003777 microtubule motor activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0008017 microtubule binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
ath:AT2G22610
ath:AT5G27550
dosa:Os03g0114000
dosa:Os05g0397900
dosa:Os12g0616000
osa:4338710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.576
Rank 1 · TkA04G489140 · TK1151
Nucleus0.440
Rank 2 · TkA04G489140 · TK1151
Mitochondrion0.057
Rank 3 · TkA04G489140 · TK1151
Cell membrane0.050
Rank 4 · TkA04G489140 · TK1151
Golgi apparatus0.030
Rank 5 · TkA04G489140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13094CENP-Q35-82 aa
PF05859Mis1249-146 aa
PF15821DUF470960-129 aa
PF28447Ccdc2760-144 aa
PF11559ADIP61-89 aa
PF24161CCDC3961-147 aa
PF08614ATG1662-142 aa
PF25450Rab11-FIP362-88 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G489140PF13094CENP-Q35822.49.0
TkA04G489140PF05859Mis12491465.07.5
TkA04G489140PF15821DUF4709601290.1713.0
TkA04G489140PF28447Ccdc27601441.88.0
TkA04G489140PF11559ADIP61890.0913.6
TkA04G489140PF24161CCDC39611470.419.2
TkA04G489140PF08614ATG16621420.7310.7
TkA04G489140PF25450Rab11-FIP362882.09.4
TkA04G489140PF23649FKBP15621442.78.2
TkA04G489140PF28016Mua621355.27.9
TkA04G489140PF07889DUF166462846.67.5
TkA04G489140PF27935CCDC61_coil631450.7911.0
TkA04G489140PF20993CENPH631337.87.3
TkA04G489140PF30378CEP135_TSGA10_CC641230.0002620.2
TkA04G489140PF30842LEKR1671458.47.4
TkA04G489140PF00038Filament851300.1612.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4K4C5Arabidopsis thalianasp|F4K4C5|KN14S_ARATH Kinesin-like protein KIN-14S60.100%Swiss-ProtHigh
F4IJK6Arabidopsis thalianasp|F4IJK6|KN14R_ARATH Kinesin-like protein KIN-14R53.200%Swiss-ProtMedium
Q75HV1Oryza sativa subsp. japonicasp|Q75HV1|KN14J_ORYSJ Kinesin-like protein KIN-14J50.000%Swiss-ProtHigh
Q2QM62Oryza sativa subsp. japonicasp|Q2QM62|KN14R_ORYSJ Kinesin-like protein KIN-14R56.200%Swiss-ProtMedium
B9FAF3Oryza sativa subsp. japonicasp|B9FAF3|KN14E_ORYSJ Kinesin-like protein KIN-14E57.500%Swiss-ProtMedium

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