TkA04G478400 | RubberDandelionOmics

Gene overview

TkA04G478400

Reference: TK1151 Chr: Chr04 Coordinates: 120871152-120873167 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1323 bp · TkA04G478400|TK1151|cDNA

CTCAAATACACACACATAAACACAGAGTTACTTTCCCGCTCCTTTCTCTTGTCTGCACAAAATCAACAGTGTCTTCATATTGTACTAACTAGGGCTTTGCTAAAGGTCTGATTATAACCGGAGATCCGCCATGGAAATCGGTGGCAAAACGAACCTTCTTCTTCTATTTGGATGTTCTCTTCTACTGTGTTTGATTGCTTCATCTGATTCATCGCTTCAGTACGACTATTATCGACAATCCTGCCCTGAAGCGCAACAGA...

CDS

Download CDS FASTA

1077 bp · TkA04G478400|TK1151|CDS

ATGGAAATCGGTGGCAAAACGAACCTTCTTCTTCTATTTGGATGTTCTCTTCTACTGTGTTTGATTGCTTCATCTGATTCATCGCTTCAGTACGACTATTATCGACAATCCTGCCCTGAAGCGCAACAGATTATTAAATCAACTCTACGCCGGATCTACAATCGAAATTCGAGTGCTGCTCCAGCTATTCTTCGCCTGGTTTTTCACGATTGTTTTGTACAGGGATGTGATGCATCAGTGCTTTTGGATCCCACAGAAAT...

Protein

Download Protein FASTA

358 aa · TkA04G478400|TK1151|PROTEIN

MEIGGKTNLLLLFGCSLLLCLIASSDSSLQYDYYRQSCPEAQQIIKSTLRRIYNRNSSAAPAILRLVFHDCFVQGCDASVLLDPTEIMGSEKDTPPNQSLKGFDHLDIIKAELEHACPGVVSCADLLVVAARESVILAGGPFYPVHTGRKDSKRSFPQLSYELPSPLDDLPTNIARFSTRGFTDKETVTLLGAHSTGMIHCKFFEKRLYNFGGTDHPDPSMDSEFADLLRSICNNNRSHSHSHSHSQSPSASESASPSPS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G478400`
TK1151 ID	TkA04G478400
OH-1004 ID	LXL04_038933
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 99.721 / OH-1004 84.198 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G478400

Location Chr04:120871152-120873167 (+)

Description Similar to PER48: Putative Peroxidase 48

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g33870`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At3g03670`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g17820`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g33420`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038933 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0051707 response to other organism Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0080001 mucilage extrusion from seed coat Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ahf:112743807

ath:AT3G03670

ath:AT4G33870

ath:AT4G36430

ath:AT5G17820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.378

Rank 1 · TkA04G478400 · TK1151

Extracellular0.229

Rank 2 · TkA04G478400 · TK1151

Cell membrane0.137

Rank 3 · TkA04G478400 · TK1151

Cytoplasm0.133

Rank 4 · TkA04G478400 · TK1151

Endoplasmic reticulum0.113

Rank 5 · TkA04G478400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase46-318 aa

PF08015Pheromone221-280 aa

PF00937CoV_nucleocap232-269 aa

PF01254TP2233-271 aa

PF12278SDP_N237-269 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G478400	`PF00141`	peroxidase	46	318	4.6e-72	243.4
TkA04G478400	`PF08015`	Pheromone	221	280	0.039	15.7
TkA04G478400	`PF00937`	CoV_nucleocap	232	269	2.1	8.1
TkA04G478400	`PF01254`	TP2	233	271	0.23	12.8
TkA04G478400	`PF12278`	SDP_N	237	269	2.4	8.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O81755`	Arabidopsis thaliana	sp\|O81755\|PER48_ARATH Putative Peroxidase 48	48.700%	Swiss-Prot	Medium
`Q9SS67`	Arabidopsis thaliana	sp\|Q9SS67\|PER28_ARATH Peroxidase 28	37.200%	Swiss-Prot	Medium
`Q43729`	Arabidopsis thaliana	sp\|Q43729\|PER57_ARATH Peroxidase 57	36.600%	Swiss-Prot	Medium
`Q9SZB9`	Arabidopsis thaliana	sp\|Q9SZB9\|PER47_ARATH Peroxidase 47	36.800%	Swiss-Prot	Medium

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