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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G476630
Reference: TK1151 Chr: Chr04 Coordinates: 120334167-120336564 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1546 bp · TkA04G476630|TK1151|cDNA

TTATATCTAGCTTGCTTTCTCTCCAAGACGGAAGCTTAATAGAAAACTCATCCGCCCTCCCTTTTTTCTCCGTGAGGTAACGATGGCGACGCCGATGGCAGAAGACACGAGCTTTGAAGATGATCAGTTGGCATCCATGTCTACCGAAGACATTCAGAGGGCTTCTCGCCTTCTTGATAACGAGATTCGAATCCTTAAGGAAGAATTGCAGAGAACCAATCTCGAATTGGATTCGTTTAAGGAAAAGATAAAGGAGAATC...

CDS

Download CDS FASTA

1272 bp · TkA04G476630|TK1151|CDS

ATGGCGACGCCGATGGCAGAAGACACGAGCTTTGAAGATGATCAGTTGGCATCCATGTCTACCGAAGACATTCAGAGGGCTTCTCGCCTTCTTGATAACGAGATTCGAATCCTTAAGGAAGAATTGCAGAGAACCAATCTCGAATTGGATTCGTTTAAGGAAAAGATAAAGGAGAATCAGGAGAAGATTAAACTTAACAAGCAACTTCCTTACTTAGTCGGAAACATCGTCGAGATTTTGGAAATGAACCCAGAGGATGA...

Protein

Download Protein FASTA

423 aa · TkA04G476630|TK1151|PROTEIN

MATPMAEDTSFEDDQLASMSTEDIQRASRLLDNEIRILKEELQRTNLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G476630
TK1151 IDTkA04G476630
OH-1004 IDLXL04_000872
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)49.800
Protein coverage (%)TK1151 73.995 / OH-1004 65.481
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G476630
LocationChr04:120334167-120336564 (-)
DescriptionSimilar to RPT2A: 26S proteasome regulatory subunit 4 homolog A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g05530 The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins.
The Arabidopsis proteasome RPT5 subunits are essential for gametophyte development and show accession-dependent redundancy.2009 · DOI: 10.1105/tpc.108.062372
Arabidopsis thaliana 26S proteasome subunits RPT2a and RPT5a are crucial for zinc deficiency-tolerance.2011 · DOI: 10.1271/bbb.100794
Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation.2014 · DOI: 10.1021/pr401245g
At1g09100 The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins.
Regulatory functions of nuclear hexokinase1 complex in glucose signaling.2006 · DOI: 10.1016/j.cell.2006.09.028

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0803700 The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000872 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0007292 female gamete generation Biological Process
GO:0009408 response to heat Biological Process
GO:0009933 meristem structural organization Biological Process
GO:0009965 leaf morphogenesis Biological Process
GO:0010015 root morphogenesis Biological Process
GO:0010078 maintenance of root meristem identity Biological Process
GO:0010229 inflorescence development Biological Process
GO:0010311 lateral root formation Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0035266 meristem growth Biological Process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process
KEGG gene cross-reference
ath:AT2G20140
ath:AT4G29040
dme:Dmel_CG5289
dosa:Os07g0691800
rno:117263
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.570
Rank 1 · TkA04G476630 · TK1151
Nucleus0.483
Rank 2 · TkA04G476630 · TK1151
Mitochondrion0.074
Rank 3 · TkA04G476630 · TK1151
Cell membrane0.063
Rank 4 · TkA04G476630 · TK1151
Endoplasmic reticulum0.048
Rank 5 · TkA04G476630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01695IstB_IS2110-63 aa
PF20878REST_helical12-62 aa
PF13086AAA_1121-68 aa
PF06745ATPase29-55 aa
PF07728AAA_530-86 aa
PF01057Parvo_NS145-74 aa
PF27289YomX_N47-68 aa
PF13479AAA_2464-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G476630PF01695IstB_IS2110630.07213.3
TkA04G476630PF20878REST_helical12621.310.0
TkA04G476630PF13086AAA_1121680.1412.6
TkA04G476630PF06745ATPase29550.2811.2
TkA04G476630PF07728AAA_530863.8e-0730.9
TkA04G476630PF01057Parvo_NS145740.09712.4
TkA04G476630PF27289YomX_N47680.04514.5
TkA04G476630PF13479AAA_2464800.08813.2
TkA04G476630PF06068TIP49721410.04613.6
TkA04G476630PF16450Prot_ATP_ID_OB_C731492.2e-1040.9
TkA04G476630PF27289YomX_N911530.04514.5
TkA04G476630PF05673DUF8151622720.0005319.9
TkA04G476630PF25199nSTAND_NTPase51972770.09613.2
TkA04G476630PF12775AAA_71982730.005916.9
TkA04G476630PF02367TsaE2022300.2612.0
TkA04G476630PF20878REST_helical2022091.310.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SEI2Arabidopsis thalianasp|Q9SEI2|PS6AA_ARATH 26S proteasome regulatory subunit 6A homolog A94.100%Swiss-ProtHigh
O04019Arabidopsis thalianasp|O04019|PS6AB_ARATH 26S proteasome regulatory subunit 6A homolog B92.900%Swiss-ProtHigh
P46465Oryza sativa subsp. japonicasp|P46465|PRS6A_ORYSJ 26S proteasome regulatory subunit 6A homolog92.400%Swiss-ProtHigh

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