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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G468290
Reference: TK1151 Chr: Chr04 Coordinates: 118223157-118224734 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1025 bp · TkA04G468290|TK1151|cDNA

CTGTTTTCAATTTCTCGTCTCGTCTTCTGCTATCTACTTATTTCTCTCGTGCGGCAACCAACGGCGACTTTCAGTGTGTGAATAGAGAGCGAGAGAGAAGGCGATGGCGAGGAGACCGGACGACGAATACGATTACTTGTTCAAGGTCGTACTGATCGGAGATTCAGGGGTCGGTAAATCCAATCTTCTCTCTCGATTCACGCGAAATGAGTTTTGTTTGGAGTCCAAATCCACCATAGGCGTTGAATTCGCCACTCGTA...

CDS

Download CDS FASTA

648 bp · TkA04G468290|TK1151|CDS

ATGGCGAGGAGACCGGACGACGAATACGATTACTTGTTCAAGGTCGTACTGATCGGAGATTCAGGGGTCGGTAAATCCAATCTTCTCTCTCGATTCACGCGAAATGAGTTTTGTTTGGAGTCCAAATCCACCATAGGCGTTGAATTCGCCACTCGTACCCTCCAAGTAGAGGGAAAGACAGTGAAGGCTCAAATATGGGACACAGCAGGTCAAGAGAGATACCGAGCAATAACCAGTGCCTATTACCGTGGGGCCCTAGG...

Protein

Download Protein FASTA

215 aa · TkA04G468290|TK1151|PROTEIN

MARRPDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDTTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVTTEDAQTFAEKEGLSFIETSALEAVNVEKSFQTILGEIYKIVSKKSLAVANSGGGGGGVKQGETLEVGSQDVNAKKSCCF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G468290
TK1151 IDTkA04G468290
OH-1004 IDLXL04_036389
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)75.200
Protein coverage (%)TK1151 99.535 / OH-1004 95.536
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G468290
LocationChr04:118223157-118224734 (+)
DescriptionSimilar to RAB11C: Ras-related protein Rab11C
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g09630 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At3g46830 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At1g07410 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036389 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015031 protein transport Biological Process
GO:0042546 cell wall biogenesis Biological Process
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009504 cell plate Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0010008 endosome membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT1G07410
ath:AT3G46830
bvg:104900042
nta:107829726
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.491
Rank 1 · TkA04G468290 · TK1151
Cytoplasm0.447
Rank 2 · TkA04G468290 · TK1151
Cell membrane0.202
Rank 3 · TkA04G468290 · TK1151
Endoplasmic reticulum0.155
Rank 4 · TkA04G468290 · TK1151
Lysosome / Vacuole0.147
Rank 5 · TkA04G468290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf13-147 aa
PF00071Ras14-174 aa
PF08477Roc14-128 aa
PF01926MMR_HSR114-120 aa
PF00009GTP_EFTU14-33 aa
PF10662PduV-EutP14-66 aa
PF09439SRPRB14-134 aa
PF04670Gtr1_RagA14-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G468290PF00025Arf131477.5e-1349.0
TkA04G468290PF00071Ras141741.3e-62210.8
TkA04G468290PF08477Roc141283.4e-35121.6
TkA04G468290PF01926MMR_HSR1141201.1e-0629.4
TkA04G468290PF00009GTP_EFTU14333.2e-0524.3
TkA04G468290PF10662PduV-EutP14660.05514.0
TkA04G468290PF09439SRPRB141340.05513.6
TkA04G468290PF04670Gtr1_RagA141310.09412.8
TkA04G468290PF02421FeoB_N14700.1212.6
TkA04G468290PF03193RsgA_GTPase15350.0001122.7
TkA04G468290PF13401AAA_2215490.02115.8
TkA04G468290PF00005ABC_tran15380.04615.0
TkA04G468290PF13191AAA_1615340.05514.7
TkA04G468290PF05621TniB15360.1911.9
TkA04G468290PF07728AAA_515330.2412.1
TkA04G468290PF00009GTP_EFTU501703.2e-0524.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O04486Arabidopsis thalianasp|O04486|RAA2A_ARATH Ras-related protein RABA2a83.300%Swiss-ProtHigh
Q96283Arabidopsis thalianasp|Q96283|RAA2C_ARATH Ras-related protein RABA2c74.400%Swiss-ProtHigh
Q9LNW1Arabidopsis thalianasp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b74.800%Swiss-ProtHigh

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