TkA04G451490 | RubberDandelionOmics

Gene overview

TkA04G451490

Reference: TK1151 Chr: Chr04 Coordinates: 113720042-113722315 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1322 bp · TkA04G451490|TK1151|cDNA

ATGGTAGCAGCTGTTTCATCAATGGAATCCAGTGATGCTTATACGTTGTTGAAAGCATTGTTGGCAGATTTTCGTAACAGATCAAAAAATGGAGAATACATTCTTCCATTATTAATTAATCACAGTGATTATGTTATATCTCAAGAATTCACATCTCAACTACTGGATTCATTGTACAAGCTTACAAAGTCAAAAGGGGAGATTACTCAGTCGTTACTACAGCTATCAGGACGTTTACAACTTTTTACAGCACAAGTTAA...

CDS

Download CDS FASTA

639 bp · TkA04G451490|TK1151|CDS

ATGGTAGCAGCTGTTTCATCAATGGAATCCAGTGATGCTTATACGTTGTTGAAAGCATTGTTGGCAGATTTTCGTAACAGATCAAAAAATGGAGAATACATTCTTCCATTATTAATTAATCACAGTGATTATGTTATATCTCAAGAATTCACATCTCAACTACTGGATTCATTGTACAAGCTTACAAAGTCAAAAGGGGAGATTACTCAGTCGTTACTACAGCTATCAGGACGTTTACAACTTTTTACAGCACAAGTTAA...

Protein

Download Protein FASTA

212 aa · TkA04G451490|TK1151|PROTEIN

MVAAVSSMESSDAYTLLKALLADFRNRSKNGEYILPLLINHSDYVISQEFTSQLLDSLYKLTKSKGEITQSLLQLSGRLQLFTAQVNVSINMKLRKNSIMLEVSSGERTSSGIANSSKRRRHSGLESELDNLRKELSSTDGGIFPHSVLSTQQITMLCSQKPETTQQLEKIIGKLKTQKYGDKILEVIGKHEPDEVQDHDSPSEEEEERKRV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G451490`
TK1151 ID	TkA04G451490
OH-1004 ID	LXL04_038628
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	98.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G451490

Location Chr04:113720042-113722315 (+)

Description Similar to RECQL2: ATP-dependent DNA helicase Q-like 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31360`	3'-5' DNA helicase that may play a role in the repair of DNA.	AtRECQ2, a RecQ helicase homologue from Arabidopsis thaliana, is able to disrupt various recombinogenic DNA structures in vitro.2008 · DOI: 10.1111/j.0960-7412.2008.03511.x Biochemical characterization of AtRECQ3 reveals significant differences relative to other RecQ helicases.2009 · DOI: 10.1104/pp.109.144709 Fork sensing and strand switching control antagonistic activities of RecQ helicases.2013 · DOI: 10.1038/ncomms3024

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038628 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000724 double-strand break repair via homologous recombination Biological Process

GO:0006260 DNA replication Biological Process

GO:0006281 DNA repair Biological Process

GO:0006310 DNA recombination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005694 chromosome Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016592 mediator complex Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0009378 four-way junction helicase activity Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

KEGG gene cross-reference

ath:AT1G31360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.818

Rank 1 · TkA04G451490 · TK1151

Cytoplasm0.234

Rank 2 · TkA04G451490 · TK1151

Mitochondrion0.052

Rank 3 · TkA04G451490 · TK1151

Cell membrane0.026

Rank 4 · TkA04G451490 · TK1151

Golgi apparatus0.015

Rank 5 · TkA04G451490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04003Utp124-82 aa

PF22724NCAB117-85 aa

PF04003Utp12125-136 aa

PF00570HRDC126-188 aa

PF22724NCAB1158-190 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G451490	`PF04003`	Utp12	4	82	0.00062	20.6
TkA04G451490	`PF22724`	NCAB1	17	85	0.026	15.3
TkA04G451490	`PF04003`	Utp12	125	136	0.00062	20.6
TkA04G451490	`PF00570`	HRDC	126	188	2e-09	38.0
TkA04G451490	`PF22724`	NCAB1	158	190	0.026	15.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FT73`	Arabidopsis thaliana	sp\|Q9FT73\|RECQ2_ARATH ATP-dependent DNA helicase Q-like 2	59.500%	Swiss-Prot	Low

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