TkA04G440890 | RubberDandelionOmics

Gene overview

TkA04G440890

Reference: TK1151 Chr: Chr04 Coordinates: 111211540-111213832 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1732 bp · TkA04G440890|TK1151|cDNA

TTTGCAGGGCTTTGCATGAAAAAGACGAGCAACGCATGACACGTGCAAAGTTCTTCCTAATCGCTCTAATTTGCAGCTTCTCATGGTACGTAATCCCAGGATACCTCTTTACAACTCTCTCAAGCATCTCATGGGTTTGCTGGGTCTTCTCCGGTTCAGTCACCGCCCAACAACTGGGATCCGGCATGCGAGGTCTAGGGTTCGGAGCCATAACCCTAGACTGGTCTGTTGCAGCATCTTTCTTGTTCAGCCCTCTAATC...

CDS

Download CDS FASTA

1587 bp · TkA04G440890|TK1151|CDS

ATGACACGTGCAAAGTTCTTCCTAATCGCTCTAATTTGCAGCTTCTCATGGTACGTAATCCCAGGATACCTCTTTACAACTCTCTCAAGCATCTCATGGGTTTGCTGGGTCTTCTCCGGTTCAGTCACCGCCCAACAACTGGGATCCGGCATGCGAGGTCTAGGGTTCGGAGCCATAACCCTAGACTGGTCTGTTGCAGCATCTTTCTTGTTCAGCCCTCTAATCAGCCCTTTCTTCGCCATTGTTAACGTTCTTCTGGG...

Protein

Download Protein FASTA

528 aa · TkA04G440890|TK1151|PROTEIN

MTRAKFFLIALICSFSWYVIPGYLFTTLSSISWVCWVFSGSVTAQQLGSGMRGLGFGAITLDWSVAASFLFSPLISPFFAIVNVLLGYALIIYVVMPFSYWGVDLYGARRFPIFSSHLFTAEGQKYNISAIVNDKFQIDMVKYEEQGRIHMSTFFALTYGFGFASIASTLTHVGFFYGREIYDRFRASYKEKEDIHTRLMKRYKDIPNWWFHLLLVGTLVVSLLLCTILNDQVQMPWWGLIFASVIAFIFTLPISIITAT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G440890`
TK1151 ID	TkA04G440890
OH-1004 ID	LXL04_038541
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G440890

Location Chr04:111211540-111213832 (-)

Description Similar to OPT4: Oligopeptide transporter 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64410`	Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	No verified direct reference in this release
`At1g09930`	Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	No verified direct reference in this release
`At4g10770`	Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	AtOPT6 transports glutathione derivatives and is induced by primisulfuron.2004 · DOI: 10.1104/pp.104.039859
`At4g27730`	Involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	AtOPT6 transports glutathione derivatives and is induced by primisulfuron.2004 · DOI: 10.1104/pp.104.039859
`At5g53510`	May be involved in the translocation of tetra- and pentapeptides across the cellular membrane in an energy-dependent manner.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038541 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015031 protein transport Biological Process

GO:0048235 pollen sperm cell differentiation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0035673 oligopeptide transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G09930

ath:AT4G10770

ath:AT4G27730

ath:AT5G53520

ath:AT5G64410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.415

Rank 1 · TkA04G440890 · TK1151

Lysosome / Vacuole0.230

Rank 2 · TkA04G440890 · TK1151

Endoplasmic reticulum0.189

Rank 3 · TkA04G440890 · TK1151

Cytoplasm0.080

Rank 4 · TkA04G440890 · TK1151

Golgi apparatus0.060

Rank 5 · TkA04G440890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03169OPT1-492 aa

PF28070TraX-like198-250 aa

PF13829DUF4191201-249 aa

PF28070TraX-like311-343 aa

PF13829DUF4191394-436 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G440890	`PF03169`	OPT	1	492	2.2e-126	423.7
TkA04G440890	`PF28070`	TraX-like	198	250	0.11	13.1
TkA04G440890	`PF13829`	DUF4191	201	249	3.5	7.7
TkA04G440890	`PF28070`	TraX-like	311	343	0.11	13.1
TkA04G440890	`PF13829`	DUF4191	394	436	3.5	7.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FME8`	Arabidopsis thaliana	sp\|Q9FME8\|OPT4_ARATH Oligopeptide transporter 4	76.500%	Swiss-Prot	High
`O04514`	Arabidopsis thaliana	sp\|O04514\|OPT2_ARATH Oligopeptide transporter 2	69.500%	Swiss-Prot	High
`O82485`	Arabidopsis thaliana	sp\|O82485\|OPT7_ARATH Oligopeptide transporter 7	57.400%	Swiss-Prot	High
`Q9T095`	Arabidopsis thaliana	sp\|Q9T095\|OPT6_ARATH Oligopeptide transporter 6	53.600%	Swiss-Prot	High
`Q9FJD2`	Arabidopsis thaliana	sp\|Q9FJD2\|OPT9_ARATH Oligopeptide transporter 9	52.300%	Swiss-Prot	High

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