Gene Card
Gene overview
cDNA / CDS / Protein Sequences
946 bp · TkA04G428180|TK1151|cDNA
CCTAAATGTTATGCCTCCGAACATATCTGCCCTGCTTCTTGTCCTGGTCAATGTGAAGTTGATTGTGTTTCTTGCAAGCCAGTTTGCAATTGTGATATGCCAGGAGCAGTGTGTCAAGATCCTCGTTTCATTGGTGGTGATGGCATCACTTTCTATTTCCATGGAAAGAAGGATCAAGATTTCTGCCTTGTTGCCGATAACAACCTCCACATCAATGGTCACTTTATAGGAAAGAGAAACAAAAACATGGACAGAGATTT...
852 bp · TkA04G428180|TK1151|CDS
CCTAAATGTTATGCCTCCGAACATATCTGCCCTGCTTCTTGTCCTGGTCAATGTGAAGTTGATTGTGTTTCTTGCAAGCCAGTTTGCAATTGTGATATGCCAGGAGCAGTGTGTCAAGATCCTCGTTTCATTGGTGGTGATGGCATCACTTTCTATTTCCATGGAAAGAAGGATCAAGATTTCTGCCTTGTTGCCGATAACAACCTCCACATCAATGGTCACTTTATAGGAAAGAGAAACAAAAACATGGACAGAGATTT...
Protein
Download Protein FASTA283 aa · TkA04G428180|TK1151|PROTEIN
PKCYASEHICPASCPGQCEVDCVSCKPVCNCDMPGAVCQDPRFIGGDGITFYFHGKKDQDFCLVADNNLHINGHFIGKRNKNMDRDFTWVQSIGLLFDNHKVQISAQKTSSWDDTVDHIFITFDGKNIFLPETKGAKWQASSTSVTRIQDINAIVLEVENIFKITARAVPITKEESRIHNYGITDDDCFAHLDLKFKFFSLSNQVDGILGQTYRNDYVSKVKMGVLMPVMGGDSKFVSENLFSTDCSVAKYKGNQEESSS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G428180 |
|---|---|
| TK1151 ID | TkA04G428180 |
| OH-1004 ID | LXL04_038431 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 98.900 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 27.081Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G428180 |
|---|---|
| Location | Chr04:108063142-108064322 (-) |
| Description | Similar to Pkd1l3: Polycystic kidney disease protein 1-like 3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006812 monoatomic cation transport Biological Process GO:0050982 detection of mechanical stimulus Biological Process GO:0070588 calcium ion transmembrane transport Biological Process GO:0071468 cellular response to acidic pH Biological Process GO:0098655 monoatomic cation transmembrane transport Biological Process GO:0005856 cytoskeleton Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0034703 cation channel complex Cellular Component GO:0043235 receptor complex Cellular Component GO:0005227 calcium-activated cation channel activity Molecular Function GO:0005262 calcium channel activity Molecular Function |
| KEGG gene cross-reference | hsa:23499 mmu:244646 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06668ITI_HC_C67-159 aaPF25753SF0329100-184 aaPF06830Root_cap195-251 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G428180 | PF06668 | ITI_HC_C | 67 | 159 | 0.0012 | 19.2 |
| TkA04G428180 | PF25753 | SF0329 | 100 | 184 | 0.11 | 13.3 |
| TkA04G428180 | PF06830 | Root_cap | 195 | 251 | 1.9e-28 | 99.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.